Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0250.Seq
(460 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6472| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009) 28 3.2
SB_25524| Best HMM Match : Ribosomal_L34e (HMM E-Value=9.6) 28 4.3
SB_55521| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-24) 27 5.6
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11) 27 5.6
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_11668| Best HMM Match : rve (HMM E-Value=6.2e-14) 27 7.5
SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_58553| Best HMM Match : rve (HMM E-Value=0.0011) 27 9.9
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_6472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 30.7 bits (66), Expect = 0.61
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -2
Query: 375 PSTTPRQERKSSTDYSE-PRHRTELYPDFGAVMHVLRKKPIDR 250
P+T PR +R+S T S+ RH + L PD A H LR++ +R
Sbjct: 8 PNTIPRSDRRSRTGISQRHRHTSSLTPDTMAGTH-LREQQSNR 49
>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
Length = 888
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 407 VSTDRSTTLLYRAQHPARNGSRLQTIPSPD 318
+ T ST +R HP + S +QT+PS D
Sbjct: 168 IQTLPSTDSAHRTDHPTQTESTVQTLPSTD 197
>SB_25524| Best HMM Match : Ribosomal_L34e (HMM E-Value=9.6)
Length = 148
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 375 PSTTPRQERKSSTDYSEPRHRTELYPDFGAVMHVLRKKP 259
P +E+KS+ + PR T LY + + +LR+ P
Sbjct: 106 PKRACTEEKKSAENLKRPRTETTLYFGLSSSLSLLRRNP 144
>SB_55521| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-24)
Length = 567
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 143 VSISLPDSARLASALEAFRHNPADGXFAPPAARXSA*TKCP 21
V++ L D + ++AFR +P+ F P A + + CP
Sbjct: 496 VTLMLLDQDNVEHVIDAFRPDPSSSSFQRPRAEMNIASGCP 536
>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
Length = 1692
Score = 27.5 bits (58), Expect = 5.6
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Frame = -3
Query: 239 PNGLRRRVSRFECET----RLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 90
PN LR R S F L CL PP++ G I L D + LA A+
Sbjct: 1246 PNDLRGRWSDFFSNLFQLEHLELDRCLRPPNAEGKPWLIILSDGSDLAYGFAAY 1299
>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -3
Query: 215 SRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPAD 72
+R+ E +L + H L PP +S SA +SA F P D
Sbjct: 35 ARYRAEAQLNRRHGLSPPTPPEGISPLSSSSSASSSSAASPFHTIPRD 82
>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1560
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 248 LRDPNGLRRRVSRFECETRLVKSHCLEPPDS 156
++DP G+RR++ F E R V L+ D+
Sbjct: 105 IKDPPGVRRKIEEFTIEQRAVNKRRLDLLDT 135
>SB_11668| Best HMM Match : rve (HMM E-Value=6.2e-14)
Length = 597
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 424 TWRRAESQQIAARRCSTEHNTPPGT 350
TWRR +QI R CS+E N P T
Sbjct: 502 TWRR-HVEQIRPRYCSSEDNEPNDT 525
>SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1501
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 327 EPRHRTELYPDFGAVMHVLRKKPIDRSPRSKWASTSR 217
EPR T L PD V L + + RSP ++W ++R
Sbjct: 1086 EPRKLTPLEPDNDTVSPTLPDESLPRSP-TRWLPSAR 1121
>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
Length = 1745
Score = 26.6 bits (56), Expect = 9.9
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Frame = -2
Query: 429 ESPGAGLSLNRSQHDAALPSTTPRQ---ERKSSTDYSEPRHRTELYPDFGAVMHVLRKKP 259
E LS +S H A P T P ER + ++ R PD G VL K
Sbjct: 313 EGAAPTLSGEKSDHTALKPVTDPSGHGGERLAERRHNGRDCRRYGQPDSGDGEAVLLKMA 372
Query: 258 IDRSPRSKWASTSR 217
+ RS W S+SR
Sbjct: 373 LMRSHSGFWFSSSR 386
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 408 SLNRSQHDAALPSTTPRQERKSSTDYSEPRHR 313
S +R + D+ PS PR+ RKS + S PR R
Sbjct: 904 SPSRRRRDSPTPSPPPRRRRKSPSP-SPPRRR 934
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,819,938
Number of Sequences: 59808
Number of extensions: 258823
Number of successful extensions: 2514
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2514
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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