Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0250.Seq
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L26987-1|AAA62312.1|  627|Caenorhabditis elegans par-2 protein.        29   1.6  
AF106580-1|AAK73890.3|  582|Caenorhabditis elegans Abnormal embr...    29   1.6  
L37867-1|AAA63155.1|  319|Caenorhabditis elegans homeodomain pro...    28   2.8  
AL022716-4|CAA18773.1|  703|Caenorhabditis elegans Hypothetical ...    27   5.0  
AL031630-13|CAA20992.1|  814|Caenorhabditis elegans Hypothetical...    27   6.6  

>L26987-1|AAA62312.1|  627|Caenorhabditis elegans par-2 protein.
          Length = 627

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
 Frame = -2

Query: 429 ESPGAGLSLNRSQHDA--ALPSTTPRQERKSSTDYSE-PRHRTELY--PDFGAVMHVLRK 265
           ES G  L  N     +  A  S +  +E+KS   +++ P H TE +  P+ G V H+L +
Sbjct: 270 ESDGTKLKRNSFLRRSLNAFRSKSSGKEQKSFRVFAQIPEHPTEHHDVPE-GDVEHLLPE 328

Query: 264 KPIDRSPRSKW 232
           KP   S RS W
Sbjct: 329 KPTKSSIRSLW 339


>AF106580-1|AAK73890.3|  582|Caenorhabditis elegans Abnormal
           embryonic partitioningof cytoplasm protein 2, isoform b
           protein.
          Length = 582

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
 Frame = -2

Query: 429 ESPGAGLSLNRSQHDA--ALPSTTPRQERKSSTDYSE-PRHRTELY--PDFGAVMHVLRK 265
           ES G  L  N     +  A  S +  +E+KS   +++ P H TE +  P+ G V H+L +
Sbjct: 225 ESDGTKLKRNSFLRRSLNAFRSKSSGKEQKSFRVFAQIPEHPTEHHDVPE-GDVEHLLPE 283

Query: 264 KPIDRSPRSKW 232
           KP   S RS W
Sbjct: 284 KPTKSSIRSLW 294


>L37867-1|AAA63155.1|  319|Caenorhabditis elegans homeodomain
           protein protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 131 LPDSARLASALEAFRHNPADGXFAPPAARXSA*TKCPKLRFLS 3
           LPD + ++S+L    HNP    ++ P       TK PKL  LS
Sbjct: 37  LPDDS-ISSSLAPLTHNPYAFNYSIPLPPTDITTKLPKLELLS 78


>AL022716-4|CAA18773.1|  703|Caenorhabditis elegans Hypothetical
           protein C24F3.4 protein.
          Length = 703

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -2

Query: 396 SQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDFGAVMHVLRKKPIDRSPRS 238
           ++H A + +     E  S  D+    HR  LYPDF      +R+K ++    S
Sbjct: 651 NRHKATVSTPAIHAENYSPDDHRND-HRPFLYPDFSYQFERIREKVVELKKNS 702


>AL031630-13|CAA20992.1|  814|Caenorhabditis elegans Hypothetical
           protein Y38H6C.14 protein.
          Length = 814

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -2

Query: 411 LSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDFGAVMHVLRKKPIDRSPRSK- 235
           ++ +RS +     S+   Q+  S +DY  PRH  +L P    V   +R  P    PR + 
Sbjct: 71  ITQHRSSYKVTKSSSCHFQDEASPSDYQMPRH-LDLKPRSSEVRVPVRAAP--EPPREQS 127

Query: 234 WAST 223
           W+ T
Sbjct: 128 WSQT 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,958,452
Number of Sequences: 27780
Number of extensions: 185088
Number of successful extensions: 463
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)