Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0250.Seq
         (460 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.39 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   0.91 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   0.91 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   0.91 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.39
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 408 SLNRSQHDAALPSTTPRQERKSST 337
           ++N+ Q   +   TTP++ERK++T
Sbjct: 776 NVNKEQSPNSTKETTPKKERKTAT 799


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +1

Query: 202 HSKRXTRRRSPFGSRRSIYRFFS*HVHHGSEVRI*LSSMSGLGIVCRR 345
           H K   RR S   +   +Y   + HVHH +   I    +   G +C R
Sbjct: 256 HQKELVRRDSRRKNYGGVYHLDNHHVHHANHHAI----LGHSGFLCER 299


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -2

Query: 363 PRQERKSSTDYSEPRHRTELYPD---FGAVMHVLRKKPIDRSPRSKWAS 226
           PR+ R+  T+Y E R++ + + +    G +   LR+  I+ + RS  AS
Sbjct: 405 PREMRQRITEYFEHRYQGKFFDEELILGELSEKLREDVINYNCRSLVAS 453


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -2

Query: 363 PRQERKSSTDYSEPRHRTELYPD---FGAVMHVLRKKPIDRSPRSKWAS 226
           PR+ R+  T+Y E R++ + + +    G +   LR+  I+ + RS  AS
Sbjct: 373 PREMRQRITEYFEHRYQGKFFDEELILGELSEKLREDVINYNCRSLVAS 421


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 406 SQQIAARRCSTEHNTPPGT 350
           S Q + +R STE   P GT
Sbjct: 534 SGQTSVQRASTEFGIPTGT 552


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 356 RNGSRLQTIPSPDIEL 309
           RNG+ L+T+  P+I +
Sbjct: 346 RNGADLETLNEPEIRV 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,258
Number of Sequences: 438
Number of extensions: 1963
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)