Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0245.Seq
         (906 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0755 - 6343084-6345172,6345526-6346367                           31   1.3  
03_03_0237 + 15706391-15706699                                         29   5.1  

>11_01_0755 - 6343084-6345172,6345526-6346367
          Length = 976

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
 Frame = +1

Query: 118 RTNCKHYKIT*SILFKADKKM------QSMSPRFTTATILGYIDEISLDYVKCE 261
           R+ C+H  +T S+       M      +   PR  + TI G   E +LDY KCE
Sbjct: 524 RSKCRHLFLTQSLTSGNQSYMDCGTNPKGKQPRARSLTIFGNAGEFALDYAKCE 577


>03_03_0237 + 15706391-15706699
          Length = 102

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 815 GPLRGTIXPXQG--FLGAXGALKPXNPGAPKG 904
           G + GTI P +G  F GA   ++P NPG   G
Sbjct: 50  GVMEGTITPTEGEGFAGANDDVRPTNPGHSPG 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,432,790
Number of Sequences: 37544
Number of extensions: 346455
Number of successful extensions: 645
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)