Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0241.Seq
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    29   0.58 
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    25   7.1  
SPAC823.06 |taf3||transcription factor TFIID complex subunit Taf...    25   7.1  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   9.4  
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    25   9.4  

>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -2

Query: 179 ICEETIRLGGSMVHHHGIG---KHRVXWSKLEHGSAWALLEGLKKQFDPNGIM 30
           + E   R  GS+   HG+G   K  V +SK +      L++ LK  FDPNGIM
Sbjct: 470 VYEWVSRHRGSISAEHGLGLLKKPFVGYSKSKE--MIHLMKTLKNVFDPNGIM 520


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 260 VLVYDYNVVDCKPEEEIDKYHXPLNKII 177
           +L   Y +  CK EE  +K+  PL+K +
Sbjct: 143 ILTAWYQLYSCKKEESSNKFLCPLSKYL 170


>SPAC823.06 |taf3||transcription factor TFIID complex subunit
           Taf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 221 EEEIDKYHXPLNKIICEETIRLGG 150
           E +ID+ +  L +I C +T+R  G
Sbjct: 3   ETQIDELYFSLMRIFCSQTLRAAG 26


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/55 (20%), Positives = 27/55 (49%)
 Frame = -3

Query: 415 MGFTTEVSGCWSCIHEIYESVINRIRTEFPXADXITMXGGHSSHSYQNGTNMYLS 251
           MG    ++  W+C+H++ E    +  ++      +T+   H+S   ++  N ++S
Sbjct: 673 MGTKRWLTKIWNCVHQLLER--EKKMSDAMRQTKLTIVDDHNSRKLESQYNEFIS 725


>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 281 LSERHQHVLVYDYNVVDCKPEEEIDKYHXPLNKI 180
           L+    H L+  ++ +   PEEE +K H  L++I
Sbjct: 193 LTVEELHTLMNSFSFIYKLPEEEKEKVHAELDEI 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,883,060
Number of Sequences: 5004
Number of extensions: 32645
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)