Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0241.Seq
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0627 + 4685077-4685155,4685978-4686336,4686761-4686862,468...    32   0.25 
04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665...    29   1.8  
10_02_0086 - 5112095-5112185,5112487-5112599,5113325-5113431,511...    27   7.2  
08_01_0675 - 5840867-5841253,5842699-5842997,5844022-5844202           27   9.5  
04_04_0945 - 29561874-29562057,29563244-29563512                       27   9.5  
01_06_0894 - 32781957-32782287,32783019-32783284,32783771-327840...    27   9.5  

>07_01_0627 +
           4685077-4685155,4685978-4686336,4686761-4686862,
           4687528-4687598,4687871-4687989,4688327-4688422,
           4688527-4688636,4688734-4688814,4689124-4689224,
           4689663-4689771,4689971-4690076,4690140-4690225,
           4690324-4690449,4690816-4690902
          Length = 543

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -2

Query: 209 DKYHXPLNKIICEETIRLGGSMVHHHGIG---KHRVXWSKLEHGSAWALLEGLKKQFDPN 39
           DK    +   + E T +  GS+   HG+G     ++ +SK     A  L+  +KK  DPN
Sbjct: 472 DKMLAQIEPFVYEWTSKQRGSISAEHGLGLMKAEKIHYSK--SSEAVQLMASIKKLLDPN 529

Query: 38  GIMN 27
            I+N
Sbjct: 530 SILN 533


>04_01_0508 +
           6647812-6647820,6647864-6648226,6649351-6650673,
           6653569-6653766,6654485-6654568,6655175-6655920,
           6656480-6657341
          Length = 1194

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 443 TCADHQNRQHGLYHRSIRLLELHPRNLRKR 354
           TC++H+N QH ++ R   +L+  P+  + R
Sbjct: 642 TCSNHENLQHAIFLRKAGMLDNRPQEEKDR 671


>10_02_0086 -
           5112095-5112185,5112487-5112599,5113325-5113431,
           5113782-5113860,5114000-5114089,5114628-5114882,
           5117025-5117174,5117634-5117933
          Length = 394

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = -2

Query: 470 WGPDXSGCXTCADHQNRQHGLYHRSIRLLELH---PRNLRK 357
           W PD        D   R HGL HR I+ L L    P NLR+
Sbjct: 29  WYPDSFIRIIGTDSLIRTHGLLHRHIKNLALRLFGPENLRR 69


>08_01_0675 - 5840867-5841253,5842699-5842997,5844022-5844202
          Length = 288

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 128 YRGGAPSNRRGEWFLH 175
           YRG AP  R+ EW +H
Sbjct: 133 YRGRAPKGRKTEWVMH 148


>04_04_0945 - 29561874-29562057,29563244-29563512
          Length = 150

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 86  CRVPVCSSXRDVYRYRGGAP 145
           CR P+ S+ RD+Y YRG  P
Sbjct: 76  CRKPLASN-RDIYMYRGDIP 94


>01_06_0894 -
           32781957-32782287,32783019-32783284,32783771-32784040,
           32785007-32785134,32785284-32785893
          Length = 534

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 89  GSAWALLEGLKKQFDPNGIMNTG 21
           G+ WA    LK +FDP  ++ TG
Sbjct: 499 GARWARFARLKAEFDPRAMLATG 521


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,438,934
Number of Sequences: 37544
Number of extensions: 258359
Number of successful extensions: 630
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)