Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0241.Seq
(534 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ002686-1|CAA05690.1| 597|Caenorhabditis elegans alkyl-dihydro... 46 2e-05
AC024801-10|AAK68514.1| 597|Caenorhabditis elegans Alkyl-dihydr... 46 2e-05
Z66513-15|CAA91337.3| 487|Caenorhabditis elegans Hypothetical p... 41 6e-04
AL110499-6|CAB57915.2| 487|Caenorhabditis elegans Hypothetical ... 41 6e-04
Z74031-13|CAE54903.1| 383|Caenorhabditis elegans Hypothetical p... 31 0.69
Z74031-12|CAE54902.1| 460|Caenorhabditis elegans Hypothetical p... 31 0.69
Z74031-11|CAD54138.1| 474|Caenorhabditis elegans Hypothetical p... 31 0.69
U76402-1|AAB39734.1| 777|Caenorhabditis elegans degenerin protein. 28 3.7
U40798-3|AAA81473.2| 777|Caenorhabditis elegans Uncoordinated p... 28 3.7
>AJ002686-1|CAA05690.1| 597|Caenorhabditis elegans
alkyl-dihydroxyacetonephosphatesynthase protein.
Length = 597
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -2
Query: 173 EETIRLGGSMVHHHGIGKHRVXWSKLEHGSAW-ALLEGLKKQFDPNGI 33
+E I GGS+ HHHG+GK R W +G+ ALL+ +K + DP I
Sbjct: 533 DEIIACGGSISHHHGVGKIRKQWMLTTNGAVGIALLKAIKSELDPANI 580
>AC024801-10|AAK68514.1| 597|Caenorhabditis elegans
Alkyl-dihydroxyacetonephosphatesynthase protein 1
protein.
Length = 597
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -2
Query: 173 EETIRLGGSMVHHHGIGKHRVXWSKLEHGSAW-ALLEGLKKQFDPNGI 33
+E I GGS+ HHHG+GK R W +G+ ALL+ +K + DP I
Sbjct: 533 DEIIACGGSISHHHGVGKIRKQWMLTTNGAVGIALLKAIKSELDPANI 580
>Z66513-15|CAA91337.3| 487|Caenorhabditis elegans Hypothetical
protein F54D5.12 protein.
Length = 487
Score = 40.7 bits (91), Expect = 6e-04
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = -2
Query: 242 NVVDCKPEEEIDKYHXPLNKIICEETIRLGGSMVHHHGIGKHRVXWSKLEHGSAWALL-E 66
N+ K EE++K P + E + GGS+ HGIG+ ++ +S LL +
Sbjct: 413 NITSEKHNEELEKLLYPF---LYEWVVDHGGSISAEHGIGQLKLPYSTFGKDPEERLLTK 469
Query: 65 GLKKQFDPNGIMN 27
LK FDPNGI+N
Sbjct: 470 KLKNIFDPNGILN 482
>AL110499-6|CAB57915.2| 487|Caenorhabditis elegans Hypothetical
protein F54D5.12 protein.
Length = 487
Score = 40.7 bits (91), Expect = 6e-04
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = -2
Query: 242 NVVDCKPEEEIDKYHXPLNKIICEETIRLGGSMVHHHGIGKHRVXWSKLEHGSAWALL-E 66
N+ K EE++K P + E + GGS+ HGIG+ ++ +S LL +
Sbjct: 413 NITSEKHNEELEKLLYPF---LYEWVVDHGGSISAEHGIGQLKLPYSTFGKDPEERLLTK 469
Query: 65 GLKKQFDPNGIMN 27
LK FDPNGI+N
Sbjct: 470 KLKNIFDPNGILN 482
>Z74031-13|CAE54903.1| 383|Caenorhabditis elegans Hypothetical
protein F32D8.12c protein.
Length = 383
Score = 30.7 bits (66), Expect = 0.69
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 152 GSMVHHHGIGKHRVXWSKLEHG-SAWALLEGLKKQFDPNGIMNTGYYLSAL 3
G+ HGIG + + + E G + L+ +K DPN IMN G L L
Sbjct: 333 GTCTGEHGIGLGKRKYLREELGENTVRLMHTIKHALDPNNIMNPGKVLPEL 383
>Z74031-12|CAE54902.1| 460|Caenorhabditis elegans Hypothetical
protein F32D8.12b protein.
Length = 460
Score = 30.7 bits (66), Expect = 0.69
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 152 GSMVHHHGIGKHRVXWSKLEHG-SAWALLEGLKKQFDPNGIMNTGYYLSAL 3
G+ HGIG + + + E G + L+ +K DPN IMN G L L
Sbjct: 410 GTCTGEHGIGLGKRKYLREELGENTVRLMHTIKHALDPNNIMNPGKVLPEL 460
>Z74031-11|CAD54138.1| 474|Caenorhabditis elegans Hypothetical
protein F32D8.12a protein.
Length = 474
Score = 30.7 bits (66), Expect = 0.69
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 152 GSMVHHHGIGKHRVXWSKLEHG-SAWALLEGLKKQFDPNGIMNTGYYLSAL 3
G+ HGIG + + + E G + L+ +K DPN IMN G L L
Sbjct: 424 GTCTGEHGIGLGKRKYLREELGENTVRLMHTIKHALDPNNIMNPGKVLPEL 474
>U76402-1|AAB39734.1| 777|Caenorhabditis elegans degenerin protein.
Length = 777
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 197 CGTCRFPLPAYSQRRCNRR 253
CG RFPLP+ R CN +
Sbjct: 569 CGDPRFPLPSEEHRHCNAK 587
>U40798-3|AAA81473.2| 777|Caenorhabditis elegans Uncoordinated
protein 8 protein.
Length = 777
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 197 CGTCRFPLPAYSQRRCNRR 253
CG RFPLP+ R CN +
Sbjct: 569 CGDPRFPLPSEEHRHCNAK 587
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,727,255
Number of Sequences: 27780
Number of extensions: 194721
Number of successful extensions: 379
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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