Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0240.Seq
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    27   4.9  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   4.9  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    26   6.4  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   6.4  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    26   6.4  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    26   6.4  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    26   8.5  

>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 596 TKFVETTGTKVISGGLGTLETIGKKTMEVLKMEILGWQRNEHYS 465
           +KFV+  G     GG  TL  +G +    L+  +LG   + +Y+
Sbjct: 248 SKFVKPDGAFFGIGGDITLSYVGSRLSRTLRPRVLGGSSHSYYN 291


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -2

Query: 348 ENLFDDFEGLVHLEALEMLSRQVNMRIEERMRGSRLKNDRILRKLCSRLLSY 193
           ENL      L  + +LE    + N  I E  R S         KLC+R++SY
Sbjct: 733 ENLLSLSPNLTSVNSLETAMTRYN--INEDQRNSEASRCVYFLKLCTRIISY 782


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 122 RETXDRDSRSRAEVTISAHRQTVHRSDRLVVV 27
           ++  D  SRSR  + I+    T+  +D +VVV
Sbjct: 607 QKALDNASRSRTTIVIAHRLSTIRNADNIVVV 638


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -2

Query: 801 LKIPKKNFLIRVRPDASQPSYFL 733
           LK     FL   RPD S PSYFL
Sbjct: 208 LKQLANKFLFFFRPDVSFPSYFL 230


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 230 LSFFRREPRIRSSILMFTCRDSISK 304
           LSF  R P I   +L+F C  S+ +
Sbjct: 225 LSFINRHPSILKDMLLFACTGSVGQ 249


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 101 SRSRAEVTISAHRQTVHRSDRLVVVG 24
           +RS   +TI+    T+ R+D+++VVG
Sbjct: 668 NRSMTTITIAHKLATIRRADQIIVVG 693


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -2

Query: 750 QPSYFLVFLPLVADASATRLLSQPCSLGLVRVCLNVCDDTVF 625
           +P +  V +  V D     L+   C L    VC N+ + T++
Sbjct: 59  KPKHIAVIIECVEDGGIEGLIHDACELSAWCVCSNIRELTIY 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,168
Number of Sequences: 5004
Number of extensions: 48249
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)