Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0240.Seq
         (910 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0328 - 23170019-23170168,23170865-23170903,23171043-231711...    31   1.7  
01_01_0282 - 2349336-2349583,2349719-2349786,2349880-2349950,235...    30   2.2  
04_04_0330 + 24456200-24456261,24456385-24456520,24457100-244571...    29   5.1  
01_01_1214 - 9793854-9794003,9795418-9795456,9795604-9795702,979...    29   6.7  
11_06_0157 - 20754134-20755085,20755311-20755642                       28   8.9  
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536...    28   8.9  

>03_05_0328 -
           23170019-23170168,23170865-23170903,23171043-23171141,
           23171214-23171342,23171915-23172061,23172959-23173089,
           23173938-23174157,23174294-23174387,23174469-23174581,
           23174727-23174861,23175231-23175335,23175440-23175544,
           23176240-23176327,23176415-23176536,23176611-23176670,
           23177434-23177529,23177620-23177772,23177865-23177951,
           23179179-23179246,23179603-23179726,23180235-23180330,
           23180430-23180539,23180647-23180761,23181622-23181699,
           23181843-23181908,23182203-23182363,23182781-23183099
          Length = 1069

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 221 LKILSFFRREPRIRSSILMFTCRDSISKASK*TRPSKSSN 340
           LK +S +  EP + + +L F C   ++KA + T  S S N
Sbjct: 754 LKAISLYADEPEVTTPLLKFMCEFVLNKAQRLTFDSSSPN 793


>01_01_0282 -
           2349336-2349583,2349719-2349786,2349880-2349950,
           2350022-2350123,2350309-2350449,2350540-2350716,
           2352228-2352338
          Length = 305

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +3

Query: 246 ESPASVLLFSCSLAGIASLRLPSELDLQNRQ 338
           +SPA V LFS SL+GIAS      LDL  R+
Sbjct: 204 DSPAVVSLFSGSLSGIASSTATFPLDLVKRR 234


>04_04_0330 +
           24456200-24456261,24456385-24456520,24457100-24457165,
           24457260-24457310,24457399-24457455,24457742-24457827,
           24458207-24458216,24458385-24458450,24458744-24458784,
           24460050-24460182,24460857-24461045,24461145-24461219,
           24462228-24462358,24463155-24463229,24463385-24463562
          Length = 451

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 793 NFQTRGGELSLMDTVRNAVGSGNDNAGXE 879
           +F   GG  SL+D + N VG GN   G E
Sbjct: 228 SFSFHGGMQSLIDALHNEVGDGNVKLGTE 256


>01_01_1214 -
           9793854-9794003,9795418-9795456,9795604-9795702,
           9795779-9795907,9796473-9796619,9797513-9797643,
           9798497-9798716,9798858-9798951,9799021-9799133,
           9799799-9799903,9800008-9800112,9800762-9800849,
           9800933-9801054,9801130-9801189,9802313-9802408,
           9802506-9802658,9802752-9802838,9803995-9804062,
           9804429-9804552,9805057-9805152,9805250-9805359,
           9805459-9805573,9806877-9806942,9807260-9807420,
           9807927-9808167
          Length = 972

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 221 LKILSFFRREPRIRSSILMFTCRDSISKASK*TRPSKSSN 340
           LK +S    EP + + +L F C   ++KA + T  S S N
Sbjct: 657 LKAISLCADEPEVTTPLLKFMCEFVLNKAQRLTFDSSSPN 696


>11_06_0157 - 20754134-20755085,20755311-20755642
          Length = 427

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 286 ASEHENRRTDAGLSPEKRQDLKE 218
           ASEHEN R   GL PE  +D  E
Sbjct: 279 ASEHENWRAGDGLKPESDEDEDE 301


>03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,
            5368467-5368577,5368997-5369068,5369719-5369737,
            5369838-5371142,5371317-5371397,5372441-5372604,
            5373363-5373466,5373537-5373628,5374079-5374216,
            5374370-5374426,5374820-5375046
          Length = 1713

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 276  CSLAGIASLRLPSELDLQNRQTN 344
            C LA + S+ LP ELD +N   N
Sbjct: 1204 CELADLISVHLPQELDCENNSLN 1226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,427,898
Number of Sequences: 37544
Number of extensions: 324870
Number of successful extensions: 958
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)