Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0240.Seq
         (910 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51289| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   2e-04
SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.0  
SB_544| Best HMM Match : PDZ (HMM E-Value=0.15)                        29   3.9  
SB_31077| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_49708| Best HMM Match : Homeobox (HMM E-Value=8.1e-30)              28   9.1  

>SB_51289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 22/63 (34%), Positives = 34/63 (53%)
 Frame = -2

Query: 444 PVLSQILREAKXXXXXXXXXXXXXXXXXEVHYENLFDDFEGLVHLEALEMLSRQVNMRIE 265
           P LSQ+LREAK                  V++   FD  +GL HLEALE+L+++   ++E
Sbjct: 357 PNLSQMLREAKEEAERKAAHQEQEKATKNVNFSTEFDQHQGLAHLEALEILAKESEHKVE 416

Query: 264 ERM 256
            ++
Sbjct: 417 SQI 419



 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = -3

Query: 572 TKVISGGLGTLETIGKKTMEVL 507
           +K+++ GL  LE IGKKTM+V+
Sbjct: 316 SKLVTDGLEALEFIGKKTMDVI 337


>SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1786

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +3

Query: 522 FLTNRLQSA*ATRYDFSASSFNKFSHF----*DKTSKWKRLYHRRRS 650
           +L N L++     YDF++S  N+F        D T +  R+YHRR+S
Sbjct: 631 YLCNSLENIKKRSYDFTSSEDNEFDSSDDSDSDSTPENLRIYHRRKS 677


>SB_544| Best HMM Match : PDZ (HMM E-Value=0.15)
          Length = 742

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -3

Query: 647 TSAMIQSFPFRGLISEVTKFVETTGTKVISGGLGTLETIGKKTMEVLK 504
           TS+ I+   +  L+  +T+F  T  +   S G+ T+E+I ++    +K
Sbjct: 153 TSSAIKEHTYLSLVRPLTEFATTAWSPYTSKGVNTIESIQRRAARSIK 200


>SB_31077| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +1

Query: 505 LRTSIVFLPIVSRVPRPPDMTLVPVVSTNLVTSEIRPLNGKDCIIADVQT 654
           + T+IV + I+  +  PP   L+P  +  ++T+   P+     II  + T
Sbjct: 32  ITTTIVIIIIIKSLDEPPPCHLLPFTTIVIITTITTPITTTIVIITTITT 81


>SB_49708| Best HMM Match : Homeobox (HMM E-Value=8.1e-30)
          Length = 197

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
 Frame = +3

Query: 465 RVVLVSLPTQDLHLENF---HCFLTNRLQSA*ATRYDFSASSFNKFSHF*DKTSKWKRLY 635
           R+     PTQ LHLEN    + ++    +   A+  + S +    +  F ++ +KWKR  
Sbjct: 93  RIRTAFTPTQLLHLENAFEKNHYIVGTERKQLASYLNLSETQIKVW--FQNRRTKWKRQQ 150

Query: 636 HRRRSNKHALVRDCTAATTDASHSRPQLRAGK--RENT 743
              ++ + A   + T+  +  SHS  Q    +  REN+
Sbjct: 151 AEEKATQQA-ANNSTSVKSSESHSSQQEHQNELSRENS 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,125,776
Number of Sequences: 59808
Number of extensions: 380556
Number of successful extensions: 1019
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)