Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0240.Seq
(910 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC011414-1|AAH11414.1| 505|Homo sapiens C5orf3 protein protein. 51 7e-06
AK024664-1|BAB14952.1| 505|Homo sapiens protein ( Homo sapiens ... 51 7e-06
AF159700-1|AAF76523.1| 505|Homo sapiens unknown protein. 51 7e-06
BC040452-1|AAH40452.1| 563|Homo sapiens family with sequence si... 50 2e-05
BC001096-1|AAH01096.2| 563|Homo sapiens family with sequence si... 50 2e-05
BC050701-1|AAH50701.1| 249|Homo sapiens C5orf3 protein protein. 46 3e-04
>BC011414-1|AAH11414.1| 505|Homo sapiens C5orf3 protein protein.
Length = 505
Score = 50.8 bits (116), Expect = 7e-06
Identities = 25/58 (43%), Positives = 35/58 (60%)
Frame = -2
Query: 438 LSQILREAKXXXXXXXXXXXXXXXXXEVHYENLFDDFEGLVHLEALEMLSRQVNMRIE 265
LSQ+LREAK + HY LFD+F+GL HLEALEMLS++ ++++
Sbjct: 208 LSQVLREAKEKEEIRTSNEVTVETDKKTHYGLLFDEFQGLSHLEALEMLSQESEIKVK 265
Score = 45.6 bits (103), Expect = 3e-04
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = -3
Query: 614 GLISEVTKFVETTGTKVISGGLGTLETIGKKTMEVLKMEILGWQRNE 474
G+ S ++ V++TG VISGGL LE IGKKTM+V+ G++R +
Sbjct: 153 GVFSTISTAVQSTGKSVISGGLDALEFIGKKTMDVIAEGDPGFKRTK 199
>AK024664-1|BAB14952.1| 505|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21011 fis, clone CAE04289. ).
Length = 505
Score = 50.8 bits (116), Expect = 7e-06
Identities = 25/58 (43%), Positives = 35/58 (60%)
Frame = -2
Query: 438 LSQILREAKXXXXXXXXXXXXXXXXXEVHYENLFDDFEGLVHLEALEMLSRQVNMRIE 265
LSQ+LREAK + HY LFD+F+GL HLEALEMLS++ ++++
Sbjct: 208 LSQVLREAKEKEEIRTSNEVTVETDKKTHYGLLFDEFQGLSHLEALEMLSQESEIKVK 265
Score = 45.6 bits (103), Expect = 3e-04
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = -3
Query: 614 GLISEVTKFVETTGTKVISGGLGTLETIGKKTMEVLKMEILGWQRNE 474
G+ S ++ V++TG VISGGL LE IGKKTM+V+ G++R +
Sbjct: 153 GVFSTISTAVQSTGKSVISGGLDALEFIGKKTMDVIAEGDPGFKRTK 199
>AF159700-1|AAF76523.1| 505|Homo sapiens unknown protein.
Length = 505
Score = 50.8 bits (116), Expect = 7e-06
Identities = 25/58 (43%), Positives = 35/58 (60%)
Frame = -2
Query: 438 LSQILREAKXXXXXXXXXXXXXXXXXEVHYENLFDDFEGLVHLEALEMLSRQVNMRIE 265
LSQ+LREAK + HY LFD+F+GL HLEALEMLS++ ++++
Sbjct: 208 LSQVLREAKEKEEIRTSNEVTVETDKKTHYGLLFDEFQGLSHLEALEMLSQESEIKVK 265
Score = 45.6 bits (103), Expect = 3e-04
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = -3
Query: 614 GLISEVTKFVETTGTKVISGGLGTLETIGKKTMEVLKMEILGWQRNE 474
G+ S ++ V++TG VISGGL LE IGKKTM+V+ G++R +
Sbjct: 153 GVFSTISTAVQSTGKSVISGGLDALEFIGKKTMDVIAEGDPGFKRTK 199
>BC040452-1|AAH40452.1| 563|Homo sapiens family with sequence
similarity 114, member A1 protein.
Length = 563
Score = 49.6 bits (113), Expect = 2e-05
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = -3
Query: 617 RGLISEVTKFVETTGTKVISGGLGTLETIGKKTMEVLKMEILGWQRNE 474
RG++S +T V+ TG V++GGL LE IGKKTM VL G++R +
Sbjct: 206 RGMLSAITNVVQNTGKSVLTGGLDALEFIGKKTMNVLAESDPGFKRTK 253
Score = 42.3 bits (95), Expect = 0.002
Identities = 23/58 (39%), Positives = 32/58 (55%)
Frame = -2
Query: 438 LSQILREAKXXXXXXXXXXXXXXXXXEVHYENLFDDFEGLVHLEALEMLSRQVNMRIE 265
LSQ+LREAK HY LFD+++GL HLEALE+LS + +++
Sbjct: 262 LSQMLREAKEKEKQRLAQQLTMERT--AHYGMLFDEYQGLSHLEALEILSNESESKVQ 317
>BC001096-1|AAH01096.2| 563|Homo sapiens family with sequence
similarity 114, member A1 protein.
Length = 563
Score = 49.6 bits (113), Expect = 2e-05
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = -3
Query: 617 RGLISEVTKFVETTGTKVISGGLGTLETIGKKTMEVLKMEILGWQRNE 474
RG++S +T V+ TG V++GGL LE IGKKTM VL G++R +
Sbjct: 206 RGMLSAITNVVQNTGKSVLTGGLDALEFIGKKTMNVLAESDPGFKRTK 253
Score = 42.3 bits (95), Expect = 0.002
Identities = 23/58 (39%), Positives = 32/58 (55%)
Frame = -2
Query: 438 LSQILREAKXXXXXXXXXXXXXXXXXEVHYENLFDDFEGLVHLEALEMLSRQVNMRIE 265
LSQ+LREAK HY LFD+++GL HLEALE+LS + +++
Sbjct: 262 LSQMLREAKEKEKQRLAQQLTMERT--AHYGMLFDEYQGLSHLEALEILSNESESKVQ 317
>BC050701-1|AAH50701.1| 249|Homo sapiens C5orf3 protein protein.
Length = 249
Score = 45.6 bits (103), Expect = 3e-04
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = -3
Query: 614 GLISEVTKFVETTGTKVISGGLGTLETIGKKTMEVLKMEILGWQRNE 474
G+ S ++ V++TG VISGGL LE IGKKTM+V+ G++R +
Sbjct: 153 GVFSTISTAVQSTGKSVISGGLDALEFIGKKTMDVIAEGDPGFKRTK 199
Score = 31.1 bits (67), Expect = 5.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -2
Query: 438 LSQILREAKXXXXXXXXXXXXXXXXXEVHYENLFDDFEGL 319
LSQ+LREAK + HY LFD+F+GL
Sbjct: 208 LSQVLREAKEKEEIRTSNEVTVETDKKTHYGLLFDEFQGL 247
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,541,240
Number of Sequences: 237096
Number of extensions: 1682732
Number of successful extensions: 3636
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3636
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11770329464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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