Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0240.Seq
         (910 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    27   0.31 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.9  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   5.1  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   5.1  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   5.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   8.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = +1

Query: 496 ISILRTSIVFLPIVSRVPRPPDMTLVPVVSTNLV 597
           ISIL + +VFL +VS++  PP   ++P+++  L+
Sbjct: 269 ISILLSLVVFLLLVSKI-LPPTSLVLPLIAKYLL 301


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -1

Query: 742 VFSRFPALSCGRECDASVVAAVQSRTS 662
           +F++FP+L+C  E  +  V+     T+
Sbjct: 342 LFAKFPSLACAAEPSSDAVSTTSGTTT 368


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 644 SAMIQSFPFRGLISEVTKFVETTGTKVISGG 552
           +AM+  + F  +ISE T+ +   G  + SGG
Sbjct: 360 AAMLYQYNFNIIISEPTERISPYGYPIGSGG 390


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 333 DFEGLVHLEALEMLSRQVNMRIEERMRGSRLKND 232
           D E L  LE     S++VN + EE     RL+ND
Sbjct: 71  DTEKLNQLEIESDNSKEVNDKKEENFIVDRLRND 104


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 623 EKTVSSQTFKQTRTSPRLH 679
           E++VSS+T    R++PR H
Sbjct: 251 EESVSSETNHNERSTPRSH 269


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 623 EKTVSSQTFKQTRTSPRLH 679
           E++VSS+T    R++PR H
Sbjct: 251 EESVSSETNHNERSTPRSH 269


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 623 EKTVSSQTFKQTRTSPRLH 679
           E++VSS+T    R++PR H
Sbjct: 251 EESVSSETNHNERSTPRSH 269


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 568 LVPVVSTNLVTSEIRPLNGK 627
           +VP +  NL TS  RPL+ +
Sbjct: 261 VVPEIEDNLETSLFRPLSSE 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,275
Number of Sequences: 438
Number of extensions: 3037
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)