Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0239.Seq
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    32   0.11 
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    31   0.19 
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    28   1.4  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   5.5  

>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 362 DAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESDLKGDTSDT 514
           DA++ +   +E I E   T  +Y IRT+S  Y+  Y  S   D   D +DT
Sbjct: 215 DAITSLWDPQELICERSITRMDYPIRTLSFSYDSRYLASGSEDRYVDIADT 265


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +2

Query: 455 YEQLYGKS--LESDLKGDTSDTSRDCACRCAWPIAMKTRASXKAQLKPMLKHWPPLVK 622
           YE    K+  L+SD+ G   D++RD A     PIA    ++ +  +    + W P +K
Sbjct: 50  YENFVSKNHVLQSDINGKKRDSNRDKAAVVTAPIASTHESNYEESVSKFKESWLPQLK 107


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 549 IGHAQRHAQSLEVSDVSPFKSDSR 478
           +G A  H + LE+  V+ FK DSR
Sbjct: 269 LGGAMEHLERLEIKSVASFKGDSR 292


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 451  ILRTTVRQEPGIGLKRRHVGH 513
            ++ T +  +PG  LK+RH+G+
Sbjct: 1171 MMPTNIEHDPGCTLKKRHIGN 1191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,339
Number of Sequences: 5004
Number of extensions: 48654
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)