Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0238.Seq
         (519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0213 + 26815889-26816475,26817718-26817788,26817985-268180...    31   0.42 
06_03_0872 - 25575201-25575312,25576027-25576133,25577096-255771...    28   5.2  
10_08_0663 - 19666476-19667017,19667664-19667755,19668039-196680...    27   9.0  

>02_05_0213 +
           26815889-26816475,26817718-26817788,26817985-26818073,
           26818910-26818991,26819089-26819204,26819290-26819451,
           26819531-26819680,26819969-26820037,26820375-26820491
          Length = 480

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +1

Query: 61  LMAWVVSVSISRVLAERHYLLDSXXXXXXXXLEGLFMSLI 180
           L  W  S S SRVL  RHY+LD          E    SL+
Sbjct: 153 LFLWAASTSASRVLLGRHYVLDVVAGACLGVFEAWLSSLL 192


>06_03_0872 -
           25575201-25575312,25576027-25576133,25577096-25577166,
           25577294-25577391,25577490-25577586,25577834-25577878,
           25578269-25578413
          Length = 224

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/51 (23%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
 Frame = -1

Query: 405 FMTQLHVCNGPSLLIFIKQY--LTILK*Y*FILSILESFRLSKCLIKKIMF 259
           F+  L +C+GP+LL+ + ++  +T+L+   +   ++ES  + +  +++++F
Sbjct: 40  FLFLLGLCHGPALLVDVPRHSNVTVLRKLRYAAEVMESLNIPRG-VRRVLF 89


>10_08_0663 -
           19666476-19667017,19667664-19667755,19668039-19668095,
           19668304-19668447,19668567-19668613,19668733-19668791,
           19668975-19669045,19669274-19669341,19669431-19669598,
           19669885-19669944,19670075-19670251
          Length = 494

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 143 VLEFLKVSSCPSYGCPKVHLLVFCHHCLMKN*MVEN 250
           ++ F K+ S P+ G      L FC+ C++    V++
Sbjct: 354 IMSFTKLPSTPTEGLKSSSALTFCNPCMLNTRSVDS 389


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,156,425
Number of Sequences: 37544
Number of extensions: 214443
Number of successful extensions: 389
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)