Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0237.Seq
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    29   0.91 
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi...    28   1.6  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    27   4.8  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    26   6.4  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    26   6.4  
SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.5  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   8.5  

>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 221 DPRTVAGKYNLGHPFIKANYWRDCIPLVRDAYLANAQNWVWEED 352
           DPR +   Y +  PF +++++    P+ +D  L+  Q W+  ED
Sbjct: 149 DPRNI--DYGIYRPFNQSSHYHPMCPIEQDKPLSLEQCWIGTED 190


>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +1

Query: 421 GRQGGIGKALMQYVQQRHPHLMLEVYQKNHRR*IFTRHRVFTLSIAHGRMK-PNY 582
           G  G +G A+       HPH ML V ++       TR    T  I  G  K PNY
Sbjct: 200 GTDGTVGVAIDAIGATAHPHTMLGVTKQGLAAITMTRGNKDTFIILRGGKKGPNY 254


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 1   VTQATTLSEIPTSTSASDALSKALKKRGFKFVGTTICYS 117
           V   TT SE+ T    SD  +K +      ++G+T+CYS
Sbjct: 548 VAGGTTFSELRTCYELSDKYNKDI------YIGSTVCYS 580


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
 Frame = -1

Query: 352 VFFPDPVLRVGKIGIPHQRNAVTPVIRFYKGMPQVVLSSHSSRIAG----SSERCASRIM 185
           VFFP P        +P + +   P +    G P       S+R  G    +     S + 
Sbjct: 321 VFFPLPPSASKSNSVPQKIS--NPKVEQNLGFPISREDKKSTRRVGWLKKNLSEFVSSVK 378

Query: 184 VYFPDSNSSQPH 149
             FPDS+ SQPH
Sbjct: 379 SVFPDSHGSQPH 390


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -1

Query: 193 RIMVYFP--DSNSSQPHDHSPAHMPA 122
           RI++Y P  D +  QP++H P + PA
Sbjct: 131 RILMYLPHLDKSLEQPYNHLPYYHPA 156


>SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 345 KKTVSFSVLSALWKADFWQ-RCLSHRRPSGR 434
           ++TVS   + A W   FW+ +  SH +  GR
Sbjct: 177 QRTVSLETIYATWIPTFWESKRKSHEKDEGR 207


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +2

Query: 245 YNLGHPFIKANYWRDCIPLVRDAYLANAQNWVWEEDGKLLGFVSIMEGRFLAAM 406
           Y +G+      Y    + +     L   QNW++  D +  G V+  E RFL ++
Sbjct: 344 YKMGYMGANLTYLNFLVGVTIVVMLQPIQNWLYRWDKRRHGGVARPEARFLISL 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,066,171
Number of Sequences: 5004
Number of extensions: 91655
Number of successful extensions: 216
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)