Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0237.Seq
(907 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1016 + 33830751-33831387,33831470-33831527,33831620-338317... 64 2e-10
04_04_0409 + 24992944-24993421,24993920-24994000,24994400-249946... 61 1e-09
06_03_0942 - 26185898-26185932,26186004-26186379,26186473-261866... 59 5e-09
08_02_1078 + 24179558-24179936,24180577-24180634,24180721-241808... 58 7e-09
09_04_0146 - 15080906-15081322,15081556-15081697,15081804-150818... 57 2e-08
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 32 0.55
03_02_0977 - 12842948-12843572,12844326-12844741 31 1.3
02_01_0002 - 9542-9762,11085-11196,11328-12575 31 1.3
01_01_0120 + 1119319-1119447,1120565-1120632,1121682-1121928,112... 31 1.3
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942 30 2.9
01_06_1332 - 36379736-36379909,36380395-36380459,36380534-363806... 29 6.7
07_01_0446 - 3371829-3372132,3374691-3375673 28 8.9
>01_06_1016 +
33830751-33831387,33831470-33831527,33831620-33831703,
33831819-33831954,33833191-33833451
Length = 391
Score = 63.7 bits (148), Expect = 2e-10
Identities = 26/46 (56%), Positives = 36/46 (78%)
Frame = +1
Query: 25 EIPTSTSASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGC 162
+IP TS S+++SK + +RGF+FVG T+ +SFMQA GL NDH+V C
Sbjct: 335 KIPVKTSKSESISKDMVRRGFRFVGPTVIHSFMQAVGLTNDHLVSC 380
>04_04_0409 +
24992944-24993421,24993920-24994000,24994400-24994622,
24994709-24994850,24995166-24995555
Length = 437
Score = 60.9 bits (141), Expect = 1e-09
Identities = 23/46 (50%), Positives = 34/46 (73%)
Frame = +1
Query: 25 EIPTSTSASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGC 162
++P TS +DA+SK L +RGF+ VG T+ Y+FMQ G+ NDH++ C
Sbjct: 338 QVPVKTSKADAISKDLVRRGFRSVGPTVVYTFMQVSGMTNDHLISC 383
>06_03_0942 -
26185898-26185932,26186004-26186379,26186473-26186614,
26186694-26186820,26186870-26186927,26187520-26187551,
26187848-26188454
Length = 458
Score = 58.8 bits (136), Expect = 5e-09
Identities = 24/46 (52%), Positives = 33/46 (71%)
Frame = +1
Query: 25 EIPTSTSASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGC 162
++P + +D +SK + +RGF+ VG TI YSFMQA GL NDH+V C
Sbjct: 352 QVPVKSPKADMISKDMVRRGFRGVGPTIIYSFMQAAGLTNDHLVSC 397
>08_02_1078 +
24179558-24179936,24180577-24180634,24180721-24180804,
24180908-24181010,24181359-24181649
Length = 304
Score = 58.4 bits (135), Expect = 7e-09
Identities = 27/49 (55%), Positives = 34/49 (69%)
Frame = +1
Query: 28 IPTSTSASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGCCCYP 174
IP T S+A+SK L +RGF+ VG I YSFMQA G+V DH+V C +P
Sbjct: 239 IPFRTPKSEAVSKDLVRRGFRLVGPVIVYSFMQASGIVIDHLVDCFRFP 287
>09_04_0146 -
15080906-15081322,15081556-15081697,15081804-15081887,
15081982-15082039,15084038-15084572
Length = 411
Score = 57.2 bits (132), Expect = 2e-08
Identities = 24/46 (52%), Positives = 33/46 (71%)
Frame = +1
Query: 25 EIPTSTSASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGC 162
E+P T +DA+S+ L +RGF VG T+ Y+FMQA G+ NDH+V C
Sbjct: 303 EVPMKTPKADAMSQDLLRRGFLGVGPTVIYAFMQAVGMANDHLVTC 348
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 32.3 bits (70), Expect = 0.55
Identities = 22/85 (25%), Positives = 40/85 (47%)
Frame = -2
Query: 537 PVPGKNLSPVIFLINLQHQVGMALLHILHQRLTNTALTAFGATNIAARNRPSIMLTKPRS 358
PVP ++ +PV + + + Q +T+ +A T A +RPS ++ R+
Sbjct: 132 PVPARSSTPVKTRPSTPTKTRPSTPVRTRQTANSTSDSAAARTTSAQNSRPSTPTSRSRA 191
Query: 357 LPSSSQTQFCALAR*ASRTSGMQSR 283
+P+SS A++R + T SR
Sbjct: 192 MPNSSSGAIPAMSRPGASTISATSR 216
>03_02_0977 - 12842948-12843572,12844326-12844741
Length = 346
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 574 VSSCHAQSTM*KPCAW*KFIAGDFFDKPPASGGDGAAAHTASAPY 440
VSSC+A P AW + + F GG G A +A+AP+
Sbjct: 17 VSSCNAGDHPACPAAWSAAVGAELFHGGVGGGGGGEAQCSAAAPH 61
>02_01_0002 - 9542-9762,11085-11196,11328-12575
Length = 526
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -1
Query: 424 GLRCDKHRCQKSAFHNADKTEKLTVFFPDPVLRVGKIGIPHQRNAVTP 281
GLR KH+ ++S+ + ++L FPD V+ + + Q A P
Sbjct: 59 GLRLKKHQRKRSSMRHPLSRQRLAARFPDKVVATNQTDVARQTEADAP 106
>01_01_0120 +
1119319-1119447,1120565-1120632,1121682-1121928,
1122430-1122498,1122782-1122907,1123326-1123406,
1123484-1123561,1124084-1124319,1124399-1124545,
1124864-1125152,1125231-1125352,1125713-1125749
Length = 542
Score = 31.1 bits (67), Expect = 1.3
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -2
Query: 699 SRLGNGCAGNTALAWLEKYNGPELTL 622
S LG+GC A AW+E+++G +L++
Sbjct: 126 STLGSGCCAAMAHAWMEEFSGDKLSI 151
>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
Length = 379
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 520 FIAGDFFDKPPASGGDGAAAHTASAPYQYRPDGLRCDKHRC 398
F+AG + +P ASG AA S P RP+ + + RC
Sbjct: 282 FLAGWYASRPLASGAGAAALRMCSQPTCGRPETRKHEFRRC 322
>01_06_1332 -
36379736-36379909,36380395-36380459,36380534-36380612,
36380794-36380868,36381106-36381609,36382046-36382246,
36383033-36383566
Length = 543
Score = 28.7 bits (61), Expect = 6.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 424 RQGGIGKALMQYVQQRHPHLMLEVYQKNH 510
+Q G+ + + QQ+HPHL ++ Q+ H
Sbjct: 319 QQSGLNQHQIAQTQQQHPHLNTQLLQQQH 347
>07_01_0446 - 3371829-3372132,3374691-3375673
Length = 428
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +3
Query: 477 PPDAGGLSKKSPAINFYQAQGFHIVDCAW 563
P GG +K P + ++ GF I C W
Sbjct: 71 PAATGGAEEKLPVVVYFHGGGFCIGSCTW 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,444,480
Number of Sequences: 37544
Number of extensions: 750075
Number of successful extensions: 2344
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2343
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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