Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0237.Seq
         (907 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    24   2.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   5.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.7  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   6.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.7  

>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 359 LLGFVSIMEGRFLAAMFVAPKAVR 430
           +LGFVS+M    +  +F++ K++R
Sbjct: 27  MLGFVSVMGNGMVVYIFLSTKSLR 50


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 657 MPAPYYPHSHSPA 695
           +P  Y+PH H P+
Sbjct: 312 LPPSYHPHQHHPS 324


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 359 LLGFVSIMEGRFLAAMFVAPKAVR 430
           +LGFVS M    +  +F++ K++R
Sbjct: 61  MLGFVSAMGNGMVVYIFLSTKSLR 84


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 480 VGMALLHILHQRLTNTALTAFGATN 406
           V  A  H  HQ+    A  AFGAT+
Sbjct: 92  VSAAAAHHHHQQQQAVAAAAFGATS 116


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +1

Query: 169  YPGNKP*FGKRNVQNSPRSSNCGWKVQPGASLYKSELLA*LHSAGAGCLSC 321
            +  N+P   K + +  P S     K +PG+ +  SE    + S G    SC
Sbjct: 871  HENNQPTMNKCSDRKRPASQATSVKAEPGSIMAMSESSKKVLSPGELLSSC 921


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 280,704
Number of Sequences: 438
Number of extensions: 7033
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)