Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0236.Seq
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1340 + 32766773-32767582                                        110   1e-24
09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.2  
03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,172...    29   5.0  
10_02_0144 + 5815403-5815520,5815551-5816314                           29   6.7  
05_04_0069 - 17639386-17641380                                         29   6.7  

>04_04_1340 + 32766773-32767582
          Length = 269

 Score =  110 bits (265), Expect = 1e-24
 Identities = 53/80 (66%), Positives = 66/80 (82%)
 Frame = +2

Query: 8   LAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRL 187
           L GLARGGQQ+A  +     A+++LVELASLQTSF+TLDE IK TNRRVNA+E+V+ PRL
Sbjct: 131 LTGLARGGQQVAACRAAHVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRL 190

Query: 188 ERTLAYIISELDELEREEFY 247
           E T++YI  ELDELERE+F+
Sbjct: 191 ENTISYIKGELDELEREDFF 210


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 514 ITIHWPSFYNVV-TGKTLALPNLIALQH 594
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>03_01_0218 -
           1717246-1717892,1717995-1718163,1718262-1720022,
           1720531-1720610,1720854-1720981,1721004-1721012,
           1723701-1723742,1725891-1726002,1726358-1726514,
           1726678-1726762,1727628-1727713,1727998-1728042
          Length = 1106

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +1

Query: 424 VDRSGVRRNXXXXXXNSRGGPVPNSPYSGRITIHWPSF----YNVVTGKTLALPNL 579
           V  SG R        + R GP+ +S  S R ++ WP+      ++ + ++LALP L
Sbjct: 16  VRESGERVGFEVVTLDGRTGPLASSKVSSRESVRWPTVGRYKVDIASLESLALPEL 71


>10_02_0144 + 5815403-5815520,5815551-5816314
          Length = 293

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = -3

Query: 433 CGLQTGYVWSAT-----SGLRTASPHR-PRPASW*PHRASRCRQPGERL 305
           CG QTG+V+S +      G R  +PHR  R  +  P R  R R  GE L
Sbjct: 68  CGAQTGHVFSRSIEVVRRGGRVLAPHRLRRSPALGPKRQKRRRGKGESL 116


>05_04_0069 - 17639386-17641380
          Length = 664

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 238 LTLKLVQLGDDVRECTFQPGNDYVLNGVDTSIRDLNNLVESDK 110
           +T KL  L  ++R   F P  DYVL+ V+   +D    V S+K
Sbjct: 557 ITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDILSVHSEK 599


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,313,751
Number of Sequences: 37544
Number of extensions: 439788
Number of successful extensions: 1190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)