Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0236.Seq
         (900 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27080-1|CAA81600.1|  257|Caenorhabditis elegans Hypothetical pr...   130   2e-30
Z99279-3|CAB16495.1|  298|Caenorhabditis elegans Hypothetical pr...    33   0.21 
Z81523-2|CAB04248.1|  928|Caenorhabditis elegans Hypothetical pr...    32   0.64 
Z81523-1|CAB04241.1|  944|Caenorhabditis elegans Hypothetical pr...    32   0.64 
Z30317-1|CAA82967.1|  213|Caenorhabditis elegans Hypothetical pr...    30   2.6  
AL021481-7|CAA16331.3|  629|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z27080-1|CAA81600.1|  257|Caenorhabditis elegans Hypothetical
           protein F55H2.2 protein.
          Length = 257

 Score =  130 bits (313), Expect = 2e-30
 Identities = 57/82 (69%), Positives = 72/82 (87%)
 Frame = +2

Query: 2   YELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIP 181
           Y+L GL +GG  +A+LKKN+  A++LLVELA+LQT F+TLDE IK+TNRRVNAIEHVIIP
Sbjct: 121 YDLTGLGKGGANIARLKKNYNKAIELLVELATLQTCFITLDEAIKVTNRRVNAIEHVIIP 180

Query: 182 RLERTLAYIISELDELEREEFY 247
           R+E TL YI++ELDE+EREEF+
Sbjct: 181 RIENTLTYIVTELDEMEREEFF 202


>Z99279-3|CAB16495.1|  298|Caenorhabditis elegans Hypothetical
           protein Y57G11A.3 protein.
          Length = 298

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 5   ELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKIT 142
           ELA L  G Q+L K+KK+F++     +E    +T    L+E  K+T
Sbjct: 55  ELAALKAGNQELKKMKKDFETGAVHNIENEDDETKIARLEERQKLT 100


>Z81523-2|CAB04248.1|  928|Caenorhabditis elegans Hypothetical
           protein F32H2.1b protein.
          Length = 928

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 480 GPGTQFAL*WSYYNSLAVVLQRRDWENPGVTQLNRLAAHPPFASW 614
           G  T++A+   +YN L     +  W N  V +L  L   P F SW
Sbjct: 229 GSRTEWAVKSKWYNELNPKWNKEHWSNEEVEKLKYLRESPKFVSW 273


>Z81523-1|CAB04241.1|  944|Caenorhabditis elegans Hypothetical
           protein F32H2.1a protein.
          Length = 944

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 480 GPGTQFAL*WSYYNSLAVVLQRRDWENPGVTQLNRLAAHPPFASW 614
           G  T++A+   +YN L     +  W N  V +L  L   P F SW
Sbjct: 229 GSRTEWAVKSKWYNELNPKWNKEHWSNEEVEKLKYLRESPKFVSW 273


>Z30317-1|CAA82967.1|  213|Caenorhabditis elegans Hypothetical
           protein T16G12.4 protein.
          Length = 213

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 177 MITCSMALTRLFVILITSSRVTNEVCSEANSTKSFTALWKFFFSF 43
           +ITCS  +  +F++++    +T+   SEA    ++   WK F  F
Sbjct: 103 IITCSQLILYVFLLIVIPIFLTDYFASEAQRYMNYPHEWKVFKDF 147


>AL021481-7|CAA16331.3|  629|Caenorhabditis elegans Hypothetical
           protein Y43F4B.2 protein.
          Length = 629

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +1

Query: 496 SPYSGRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNS 657
           SP+    T + P ++ +   K+  L +L+  + I  SP G+  KR AP+ + N+
Sbjct: 145 SPFEDEETPYHPDWF-LTNSKSHVLRSLMHYRPIANSPRGISTKRGAPLVIFNN 197


>Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical
           protein F38A6.2 protein.
          Length = 891

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 683 LPFAISGAQLLGRAIGAGLFAITPAGE--RGMCCKAIKLGNARV 558
           L F+     L G++IGA L   T AGE   G   K +K G++RV
Sbjct: 761 LDFSSDSQYLRGQSIGAHLLFWTKAGEICDGTSVKDVKWGSSRV 804


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,132,129
Number of Sequences: 27780
Number of extensions: 346048
Number of successful extensions: 893
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)