Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0236.Seq
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   2.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 851 LIRELLFQTGNKXXTXSRXNLWIYKGFCRIRPN 753
           LIR+ + ++ +K  T +    W    FC  R N
Sbjct: 512 LIRQSIIESPDKQLTLNEIYNWFQNTFCYFRRN 544


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -3

Query: 412 VWSATSGLRTAS--PHRPRPASW*PHRAS 332
           V+ +T+G    S  PH+  P+ + PHR S
Sbjct: 304 VYPSTAGFLPPSYHPHQHHPSQYHPHRGS 332


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 421 TGYVWSATSGLRTASPHRPRPASW*P 344
           T Y  +   G+R A+P    P +W P
Sbjct: 497 TLYKIARREGIRLAAPFNASPTTWSP 522


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,353
Number of Sequences: 438
Number of extensions: 4448
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)