Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0236.Seq
         (900 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) ...   109   2e-24
At1g33230.1 68414.m04106 expressed protein                             29   4.2  
At5g28760.1 68418.m03532 hypothetical protein contains Pfam prof...    28   9.7  

>At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) /
           V-ATPase D subunit / vacuolar proton pump D subunit
           (VATPD) identical to Vacuolar ATP synthase subunit D (EC
           3.6.3.14) (V-ATPase D subunit) (Vacuolar proton pump D
           subunit) (Swiss-Prot:Q9XGM1) [Arabidopsis thaliana]
          Length = 261

 Score =  109 bits (262), Expect = 2e-24
 Identities = 51/81 (62%), Positives = 67/81 (82%)
 Frame = +2

Query: 5   ELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPR 184
           +L GLARGGQQ+   +  +  A+++LVELASLQTSF+TLDE IK TNRRVNA+E+V+ P+
Sbjct: 122 DLTGLARGGQQVRACRVAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPK 181

Query: 185 LERTLAYIISELDELEREEFY 247
           LE T++YI  ELDELERE+F+
Sbjct: 182 LENTISYIKGELDELEREDFF 202


>At1g33230.1 68414.m04106 expressed protein
          Length = 347

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = -3

Query: 157 VDTSIRDLNNLVESDK*SLQ*S*LDQKLYSALEVLLQLCKLLPTTGQTSQLV 2
           VD+SIR L++ + SDK       LD KL+  LE  LQ  + +   G TS  +
Sbjct: 43  VDSSIRRLHSTLASDK------HLDPKLFEKLEEDLQRARCMLADGDTSSFL 88


>At5g28760.1 68418.m03532 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 520

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 226 LVQLGDDVRECTFQPGNDYVLNGVDTSIRDLNNLVESD 113
           L ++ DDV  C   P   +  +G    I+D++++VE D
Sbjct: 292 LQKIVDDVHACETFPWGRFTFDGCMEGIKDISSIVEYD 329


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,362,914
Number of Sequences: 28952
Number of extensions: 325492
Number of successful extensions: 811
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)