Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0235.Seq
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    83   5e-17
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    29   0.80 
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    27   4.3  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   7.4  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   7.4  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   7.4  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    25   9.8  
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.8  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 83.0 bits (196), Expect = 5e-17
 Identities = 45/85 (52%), Positives = 58/85 (68%)
 Frame = -2

Query: 264 KAETEADKNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQV 85
           K   E    D++VKDL  +LYETALLSSGFTLD+P  +A RI R+I LGL IDE+E   +
Sbjct: 623 KKVEENGAEDRSVKDLATILYETALLSSGFTLDDPSAYAQRINRLISLGLSIDEEEEAPI 682

Query: 84  EEPASGDVPPLEGDADDASRMEEVD 10
           EE ++  V   E +A+  S+MEEVD
Sbjct: 683 EEISTESV-AAENNAE--SKMEEVD 704


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 93  IQVEEPASGDVPPLEGDADDASRMEEVD 10
           IQ + P   D PP++ DAD+    EE D
Sbjct: 157 IQWDNPDFDDAPPVQPDADEEEEEEEAD 184


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 49  LQWRHISRSRLFNLNRLIFINTKTQFDHSIDTGSMDL 159
           L+W  I RS   N+N    ++   Q  HS+DT S+D+
Sbjct: 272 LEWS-IQRSNDSNINCSTCLDVDCQHLHSLDTHSLDI 307


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 554 VKSAHFLTNRPKSAKSLINQKNRP 625
           VK   FLTN   +  SL+ Q NRP
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRP 698


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 302 LEINPDHSIVETLRQKRKPTRMTKLLRILLSYCMKLP 192
           LE+N    IV TLRQ+  P  + K L +L       P
Sbjct: 142 LEMNIMPKIVNTLRQENHPVTLLKKLFLLSKSVQSFP 178


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 501 PFXCATVGKGDRCGPLRYYASWRKGDV 421
           P  C  V  G R GP   Y +W+  DV
Sbjct: 392 PKVCLFVRNGARLGPTSIYHAWKAFDV 418


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
 Frame = +1

Query: 13  NLLHARCIIGITLQ-WRHISRSRLFNLNR---LIFINTKTQFDHSIDTGSMDLGLIKREA 180
           ++LH+   +G  L  W    R RL  L     L  +  K  + H     +MDL    + +
Sbjct: 326 SMLHS-AYVGSRLHIWSEEGRKRLHKLLAKMGLSLVECKQTYIHM----NMDLKKTLKSS 380

Query: 181 RRQQGSFIQ*DNKILNSFVILVGFRFCLNVSTIE--*SGLISKGGPG 315
            ++   F   D+ I +SF    GF+  L+ S +    S L+  G  G
Sbjct: 381 LKRFAPFYGLDDVIFHSFTRTYGFKCTLSASDVSYAISALLEMGNTG 427


>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -3

Query: 224 RILLSYCMKLPCCLLASRLMSPKSML---PVSIE*SNWVLVLMKMSRFRLKSL 75
           +IL+ +    PC    +RL  PK +L    VS++       L ++SR  L S+
Sbjct: 83  KILIKWIRTTPCFSYCARLKEPKDLLEIGSVSVDNKCSTCGLFRVSRIDLHSV 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,370,175
Number of Sequences: 5004
Number of extensions: 69733
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)