Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0235.Seq
         (823 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   4.9  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   6.5  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            24   6.5  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    23   8.6  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 348 IHWPVVLQRRDWENPGVTQLNRLAAHPPFASWRNS 452
           +H     Q     +PG     +L+ HPP AS R+S
Sbjct: 822 LHHHAAQQPPPGSHPGAQTQPQLSQHPPGASGRSS 856


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 543  REF*QNINAYNFHSPFXCATVGKGDRCGPLRYYAS 439
            +E+ +  N YNFH+      +G+  +  P   YAS
Sbjct: 2633 QEWDEETNLYNFHARLYDPELGRFLQLDPKEQYAS 2667


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 543  REF*QNINAYNFHSPFXCATVGKGDRCGPLRYYAS 439
            +E+ +  N YNFH+      +G+  +  P   YAS
Sbjct: 2634 QEWDEETNLYNFHARLYDPELGRFLQLDPKEQYAS 2668


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 782 ALRNWTPKTLIRVMXSRSGPS 720
           A + WT  TL+R+M +++GPS
Sbjct: 733 ATKLWT--TLVRMMPNKAGPS 751


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 853,532
Number of Sequences: 2352
Number of extensions: 17568
Number of successful extensions: 36
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 87318630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)