Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0235.Seq
         (823 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    24   2.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.5  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -1

Query: 715 DRRFSPFDVGVPRSLIVDSCSKLEQHSTLSRSILL 611
           +++    ++G P   I++SC + E H+     I L
Sbjct: 506 EKKLEDLEMGTPLENILESCQQDETHAPEKTKIFL 540


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +1

Query: 667 LLKNVGLQRQRAKNVYXGDGPLREXITLIKVFGVQFRKA*IGXLXGTPDLE 819
           LLK + L   R  N Y G     + +T +++ G        G L   P+L+
Sbjct: 455 LLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQ 505


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -3

Query: 338 THYRANWVPGPPLEINPDHSIVETLRQKRKPTRMTKLLRI 219
           T     W+ G  +E+NP  +   T++++  P  +   L+I
Sbjct: 835 TPVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVIAQLQI 874


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -3

Query: 338 THYRANWVPGPPLEINPDHSIVETLRQKRKPTRMTKLLRI 219
           T     W+ G  +E+NP  +   T++++  P  +   L+I
Sbjct: 831 TPVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVIAQLQI 870


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,509
Number of Sequences: 438
Number of extensions: 4777
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)