Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0233.Seq
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    31   0.25 
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    29   0.58 
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.3  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    28   1.3  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    28   1.3  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.8  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    28   1.8  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   3.1  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    27   3.1  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   5.4  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    26   5.4  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   5.4  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    26   7.1  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    26   7.1  
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    26   7.1  
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    25   9.4  

>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 646 SPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDAS 515
           +P+K+ PAK         ++  +  A   SPA NG     N+AS
Sbjct: 113 TPLKRGPAKGFNRNADEKQKRASGSAKSSSPAVNGSVFSGNEAS 156


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -1

Query: 703 RRQEGXAPWGSNPQLSPXESPVKKSPAK-KVEAAESNGKENGTDEAPEDSPAENGDAEES 527
           R     +P    PQ SP E+  + +      + +ESN K +GT+   + +P  NG+ E +
Sbjct: 166 RNHRSPSPVSFAPQKSPVENETETNVDNGDTKISESNEK-SGTEVEQQSAPNSNGNEEVN 224

Query: 526 N 524
           N
Sbjct: 225 N 225


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 634  KSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENVMPQKRK 488
            K P+ K  +  S+  +NG+D    DS + N     SN  +EN   Q+RK
Sbjct: 963  KDPSPKSASESSSFYQNGSDIDDNDSNSSN----TSNHTTENANAQQRK 1007


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 535 EESNDASENVMPQKRKRLV*RGNLWLLM 452
           E+S DASE V  +K  +L+ RG  W+L+
Sbjct: 98  EQSGDASERVHARKVLKLLRRGKHWVLV 125


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 643 PVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEE 530
           PVKK P+KK + A++N  E   DE   +   E  D+E+
Sbjct: 72  PVKKKPSKKSKKAKANAFEAFADEQSVEEEEEE-DSEK 108


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -1

Query: 664  QLSPXESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN-DASENV 506
            +L+  E    +S   + EA E     NG  +    S  EN D+EE N D  E V
Sbjct: 3935 ELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEV 3988


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 613 EAAESNGKENGTDEAPEDSPAENGDAEESNDASEN 509
           E++E + ++N TDEA ED+ +   D     + S +
Sbjct: 355 ESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSH 389



 Score = 25.8 bits (54), Expect = 7.1
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
 Frame = -1

Query: 790 VVRNTCFEFY-SLFKFIHFFNLPCNNGRRTRRQEGXAPWGSNPQLSPXESPVKKSPAKKV 614
           + R+T ++   +++K  H F     NG       G    GS+ Q    +S        + 
Sbjct: 288 ISRDTTYQLIIAIWKNTHPFLTTLANGHGVMDASGNHHSGSSNQSINADSSAGSEGVDEG 347

Query: 613 EAAESNGKENGTDEAPEDSPAENGDAEESNDASEN 509
            + E+N + +  D+   ++   N DA +SN + E+
Sbjct: 348 TSTEANDESSEDDDEDNNTDEANEDA-QSNVSDES 381


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -1

Query: 679 WGSNPQLSPXESPVKKSP----AKKVEAAESNGKENGTDEAPEDSPAENGD 539
           +GS  +++P  +P  K+P    +K V  A+ + K+N  D++ + S  +  +
Sbjct: 163 FGSTAKVAPAPAPSTKTPLANISKPVVQAQKDSKDNSWDDSSKQSNTQTAN 213


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = -1

Query: 721 NNGRRTRRQEGXAPWGSNPQLSPXESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG 542
           NN   TR  +  +    +  +SP       S      + E+N + + T+EA   S  E  
Sbjct: 50  NNSSLTRSTDDPSVEIRSKLVSPDNEANLLSDQNITISNENNNENDTTEEAETSSGNEAA 109

Query: 541 DAEESNDASENVMP 500
           D E+S+  +++ +P
Sbjct: 110 DDEDSSSDAQSSVP 123


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 607 AESNGKENGTDEAPEDSPAENGDAEESNDASEN 509
           +ES  ++   DE  E+   EN D  +  D +EN
Sbjct: 241 SESYERDEDVDEEEEEDDDENNDEGDDEDENEN 273


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 607 AESNGKENGTDEAPEDSPAENGDAEESNDASEN 509
           +ES     G+D +   S +E+  + E ND+S +
Sbjct: 153 SESESSSEGSDSSSSSSSSESESSSEDNDSSSS 185



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 607 AESNGKENGTDEAPEDSPAENGDAEESNDASEN 509
           +ES     G+D +   S +E+  + E ND+S +
Sbjct: 207 SESESSSEGSDSSSSSSSSESESSSEDNDSSSS 239


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 673 SNPQLSPXESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDAS 515
           S+   S   S   +S +   E+ E       T+E  E S   + D+E S+D+S
Sbjct: 163 SSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSS 215


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/58 (24%), Positives = 23/58 (39%)
 Frame = -1

Query: 673 SNPQLSPXESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENVMP 500
           SNP  +P  +    S  K   A ++NG  + +   P  S     +AE     ++   P
Sbjct: 393 SNPSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRTSSPLASNAENKPPVAQQSPP 450


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 156 LQIVNLCM*LPVTECIAVN*SHKIECCMLFYVSLSFS 46
           LQ + L M L +  C+ +   + + CC+ F VSLSF+
Sbjct: 74  LQKLRLKMDLRIIPCLWI--LYFLSCCLRFTVSLSFT 108


>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 685 APWGSNPQLSPXESPVKKSPAKKVEAAESNGKENGTDEAPEDS-PAENG 542
           APWG +   +  +  + ++  KK+    SN K    ++ P D+ PA+ G
Sbjct: 212 APWGFSSAFNLIKGFLDEATVKKIHILGSNYKSALLEQIPADNLPAKLG 260


>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 565 EDSPAENGDAEESNDASENVM 503
           EDS   NG+ EE+ D +E V+
Sbjct: 52  EDSNKANGNGEETTDGAEGVL 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,088
Number of Sequences: 5004
Number of extensions: 56568
Number of successful extensions: 206
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)