Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0233.Seq
(793 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 35 0.054
At5g11980.1 68418.m01401 conserved oligomeric Golgi complex comp... 33 0.22
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 33 0.29
At1g68030.1 68414.m07772 PHD finger protein-related contains low... 32 0.50
At4g00238.1 68417.m00030 DNA-binding storekeeper protein-related... 31 1.2
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 31 1.2
At4g12610.1 68417.m01987 transcription initiation factor IIF alp... 30 1.5
At1g64620.1 68414.m07325 Dof-type zinc finger domain-containing ... 30 1.5
At3g18850.2 68416.m02394 phospholipid/glycerol acyltransferase f... 30 2.0
At3g18850.1 68416.m02393 phospholipid/glycerol acyltransferase f... 30 2.0
At1g52980.1 68414.m05995 GTP-binding family protein contains Pfa... 30 2.0
At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH) domain... 29 2.7
At5g22840.1 68418.m02670 protein kinase family protein contains ... 29 2.7
At5g22650.2 68418.m02647 expressed protein non-consensus AT dono... 29 2.7
At5g22650.1 68418.m02646 expressed protein non-consensus AT dono... 29 2.7
At5g21430.1 68418.m02535 DNAJ heat shock N-terminal domain-conta... 29 2.7
At5g19420.1 68418.m02314 zinc finger protein, putative / regulat... 29 2.7
At3g15790.1 68416.m01999 methyl-CpG-binding domain-containing pr... 29 2.7
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 29 2.7
At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3... 29 2.7
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat... 29 3.5
At3g51070.1 68416.m05592 dehydration-responsive protein-related ... 29 3.5
At2g27470.1 68415.m03320 CCAAT-box binding transcription factor ... 29 3.5
At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3 d... 29 3.5
At1g01490.1 68414.m00065 heavy-metal-associated domain-containin... 29 3.5
At5g64030.1 68418.m08039 dehydration-responsive protein-related ... 29 4.7
At4g00610.1 68417.m00085 DNA-binding storekeeper protein-related... 29 4.7
At2g22795.1 68415.m02704 expressed protein 29 4.7
At1g76185.1 68414.m08847 expressed protein 29 4.7
At5g19950.3 68418.m02375 expressed protein 28 8.2
At5g19950.2 68418.m02374 expressed protein 28 8.2
At5g19950.1 68418.m02373 expressed protein 28 8.2
At4g01590.1 68417.m00207 expressed protein 28 8.2
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 28 8.2
At1g77850.1 68414.m09072 transcriptional factor B3 family protei... 28 8.2
At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi... 28 8.2
At1g07620.1 68414.m00817 GTP1/OBG family protein similar to SP|P... 28 8.2
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 35.1 bits (77), Expect = 0.054
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = -1
Query: 616 VEAAESNGKENGTDEAPEDSPAENGDAEESNDASENVMPQKRKRL 482
+E+ +S+ +ENG ED +G+ E+ ++ ++ +KRKRL
Sbjct: 45 IESVDSDAEENGFTGGDEDGRRVDGEVEDEDEFADETAGEKRKRL 89
>At5g11980.1 68418.m01401 conserved oligomeric Golgi complex
component-related / COG complex component-related
similar to SP|Q96MW5 Conserved oligomeric Golgi complex
component 8 {Homo sapiens}; contains Pfam profile
PF04124: Dor1-like family
Length = 569
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 658 SPXESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDA 518
S + P KSP K + + ENG PE+ AEN +A+E +++
Sbjct: 511 SSSQEPSNKSP-KVISTDTKDASENGVASQPEEKQAENPNAKEEDNS 556
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = -1
Query: 637 KKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENVMPQKRKRLV*RGN 467
K+ +K E +S+ +E +E PE+ E ++E N+ E + +K + GN
Sbjct: 349 KEEEPEKREKEDSSSQEESKEEEPENKEKEASSSQEENEIKETEIKEKEESSSQEGN 405
>At1g68030.1 68414.m07772 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 314
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -1
Query: 658 SPXESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDAS 515
S E+ + SP + E S+GKEN P D P G EE S
Sbjct: 147 SSCENDTQVSPCSEEETLRSDGKENDRVTPPMDEPDLTGRTEEGESFS 194
>At4g00238.1 68417.m00030 DNA-binding storekeeper protein-related
contains Pfam PF04504: Protein of unknown function,
DUF573; similar to storekeeper protein GI:14268476
[Solanum tuberosum]
Length = 345
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 649 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPA-ENGDAEESNDASENVMPQKR 491
ESP KS KK AAES ++G +E +SPA ++G S + M KR
Sbjct: 76 ESPAVKS-GKKEGAAESPAVKSGNNEGATESPAVKSGKKRASEGTTSRDMHVKR 128
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = -1
Query: 649 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE---NGDAEESNDASENVMPQKRK 488
E VKK P KKVE+++ + E+ +E + PA+ + E S+D+S + P +K
Sbjct: 51 EKAVKKVP-KKVESSDDSDSESEEEEKAKKVPAKKAASSSDESSDDSSSDDEPAPKK 106
>At4g12610.1 68417.m01987 transcription initiation factor IIF alpha
subunit (TFIIF-alpha) family protein low similarity to
SP|Q05913 Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha) (Transcription factor 5, large
chain) (TF5A) {Drosophila melanogaster}; contains Pfam
profile PF05793: Transcription initiation factor IIF,
alpha subunit (TFIIF-alpha)
Length = 543
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 595 GKENGTDEAPEDSPAENGDAEESNDASENVMPQK 494
GK NG DE+ ED ++ D EE+N + QK
Sbjct: 349 GKANGLDESDEDDDDDSDDEEETNYGTVTNSKQK 382
>At1g64620.1 68414.m07325 Dof-type zinc finger domain-containing
protein similar to Dof zinc finger protein GB:CAA08755
GI:3341468 from [Nicotiana tabacum]
Length = 352
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -1
Query: 721 NNGRRTRRQEGXAPWGSNPQLSPXESPVKKSPAKKVEAAESNG--KENGTDEAPEDSPAE 548
+ G R++EG + + L P ES +K + + NG KEN + + + E
Sbjct: 264 DGGDPLRQEEGSSGTNNGRPLLPFESLLKLPVSSSSTNSGGNGNLKENNDEHSDHEHEKE 323
Query: 547 NGDAEES 527
G+A++S
Sbjct: 324 EGEADQS 330
>At3g18850.2 68416.m02394 phospholipid/glycerol acyltransferase
family protein contains Pfam profile: PF01553
Acyltransferase
Length = 375
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Frame = +2
Query: 509 VLRCIVAFFGI--TIFSRRIFWGFIGTI---LFAITF---C-SFNFLSWRLLDW*FXWAQ 661
VLR I+ + T F IFWGF+ + LF+I + C SF F SW L W F + +
Sbjct: 17 VLRGIICLMVLVSTAFMMLIFWGFLSAVVLRLFSIRYSRKCVSFFFGSWLAL-WPFLFEK 75
Query: 662 LRVT 673
+ T
Sbjct: 76 INKT 79
>At3g18850.1 68416.m02393 phospholipid/glycerol acyltransferase
family protein contains Pfam profile: PF01553
Acyltransferase
Length = 375
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Frame = +2
Query: 509 VLRCIVAFFGI--TIFSRRIFWGFIGTI---LFAITF---C-SFNFLSWRLLDW*FXWAQ 661
VLR I+ + T F IFWGF+ + LF+I + C SF F SW L W F + +
Sbjct: 17 VLRGIICLMVLVSTAFMMLIFWGFLSAVVLRLFSIRYSRKCVSFFFGSWLAL-WPFLFEK 75
Query: 662 LRVT 673
+ T
Sbjct: 76 INKT 79
>At1g52980.1 68414.m05995 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 576
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -1
Query: 622 KKVEAAESNGKENGTD-EAPEDSPAENGDAEESNDASENVMPQ 497
KK + + ENGTD E ED+ +E+G E +DA E+ + +
Sbjct: 524 KKAKESTETDAENGTDAEEDEDAVSEDG-VESDSDADEDAVSE 565
>At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related low similarity to clathrin assembly
protein AP180 [Xenopus laevis] GI:6492344; contains Pfam
profile PF01417: ENTH domain
Length = 591
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1
Query: 649 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENVMP 500
E+P S KK+E E +E +E + PAE E N+ +EN P
Sbjct: 308 EAPQSGSVQKKLEYQEKEEEEQEQEEEQPEEPAEE---ENQNENTENDQP 354
>At5g22840.1 68418.m02670 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 538
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -1
Query: 634 KSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENVMPQKRKRLV*RGN 467
+ AKKVE +E N +++ EA P N E ++SE V + RGN
Sbjct: 239 RKKAKKVEGSEENERDSSNSEA---RPNGNATVERLEESSERVKDAENVSQKSRGN 291
>At5g22650.2 68418.m02647 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 223
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -1
Query: 655 PXESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG---DAEESNDASE 512
P P + PA++ ++ + + DE+ ED +E G D ++S+D E
Sbjct: 55 PKAKPAEVKPAEEKPESDEEDESDDEDESEEDDDSEKGMDVDEDDSDDDEE 105
>At5g22650.1 68418.m02646 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 306
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -1
Query: 655 PXESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG---DAEESNDASE 512
P P + PA++ ++ + + DE+ ED +E G D ++S+D E
Sbjct: 138 PKAKPAEVKPAEEKPESDEEDESDDEDESEEDDDSEKGMDVDEDDSDDDEE 188
>At5g21430.1 68418.m02535 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile: PF00226
DnaJ domain;
Length = 218
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 646 SPVKKSPAKKVEAAESNGKENGTDEAPEDSPA 551
SP + S EA G DEAP++SP+
Sbjct: 44 SPARNSSEVSAEAETEGGSSTAVDEAPKESPS 75
>At5g19420.1 68418.m02314 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1124
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = -1
Query: 712 RRTRRQEGXAPWGSNPQLSPXESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAE 533
R R +G ++P+ S SP E+ + G + +P +SP +NG +
Sbjct: 157 RTESRSDGTPSEANSPRTYTRRSSPLHSPFSSNESFQKEGSNHLRLHSPYESPPKNGVDK 216
Query: 532 ESNDASENVMPQK 494
+D S +P K
Sbjct: 217 AFSDMSLYAVPPK 229
>At3g15790.1 68416.m01999 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 254
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 13/65 (20%)
Frame = -1
Query: 649 ESPVKKSPAKKVEAAESNGKENG----TDEAPEDSPAEN---------GDAEESNDASEN 509
+SPV K A+ E +E G+EN T+ P + AEN G+ E NDA EN
Sbjct: 103 KSPVSKKDAEG-EKSEGGGEENSHVKDTEMNPPEGIAENENVTDKNGSGETERVNDAKEN 161
Query: 508 VMPQK 494
++ ++
Sbjct: 162 IVAEE 166
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = -1
Query: 667 PQLSPXESPVKKSPAKKVEAAESNGKENGTDEAPEDSP-AENGDAEESNDASENVMPQKR 491
PQ ESP + P K E + PEDSP E EES + +P+
Sbjct: 435 PQPPKHESPKPEEPENKHELPKQKESPKPQPSKPEDSPKPEQPKPEESPKPEQPQIPEPT 494
Query: 490 K 488
K
Sbjct: 495 K 495
>At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3.4)
plant glutamate receptor family, PMID:11379626
Length = 959
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +2
Query: 425 REWSFLLFLHQ-EPQISSSHQS---LSFLWHHVLRC-IVAFFGITIFSRRIFWGF 574
R+W L + H+ QIS+S S L W L C I F +T+F R+FW +
Sbjct: 832 RKW--LNYKHECSMQISNSEDSQLSLKSFWGLFLICGITCFMALTVFFWRVFWQY 884
>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1062
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/75 (22%), Positives = 33/75 (44%)
Frame = -1
Query: 718 NGRRTRRQEGXAPWGSNPQLSPXESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGD 539
N R R +G ++P+ S SP ++ + +G + +P +SP +NG
Sbjct: 122 NRRTESRSDGTPSEANSPRTYTRRSSPLHSPFSSNDSLQKDGSNHLRIHSPFESPPKNGL 181
Query: 538 AEESNDASENVMPQK 494
+ +D + +P K
Sbjct: 182 DKAFSDMALYAVPPK 196
>At3g51070.1 68416.m05592 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 895
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Frame = -1
Query: 622 KKVEAAESNGK-------ENGTDEAPEDSPAENGDAEESNDASENVMPQKRKR 485
+K A+E NGK ENG E + E+G+ EE + + + M Q+ +R
Sbjct: 259 EKTTASEENGKGEKSMKDENGQQEEHTTAEEESGNKEEESTSKDENMEQQEER 311
>At2g27470.1 68415.m03320 CCAAT-box binding transcription factor
subunit HAP3-related contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to polymerase epsilon p17
subunit (DNA polymerase epsilon subunit 3) (YB-like
protein 1) (YBL1) (NF-YB-like protein) (SP:Q9JKP7) [Mus
musculus];
Length = 275
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 613 EAAESNGKENGTDEAPEDSPAENGDAEESNDASEN 509
E + N +ENG DE E EN E N++ E+
Sbjct: 202 ENDDENTEENGNDEENEKEDEENSMEENGNESEES 236
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -1
Query: 613 EAAESNGKENGTDEAPED-SPAENG-DAEESNDASENVMPQKRKRLV*RGN 467
E + N +ENG DE +D + ENG D E + EN M + GN
Sbjct: 188 ENDDENTEENGNDEENDDENTEENGNDEENEKEDEENSMEENGNESEESGN 238
>At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3
domain-containing protein similar to SP|Q9P6R9 Cell
cycle control protein cwf22 {Schizosaccharomyces pombe};
contains Pfam profiles PF02854: MIF4G domain, PF02847:
MA3 domain
Length = 900
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = -1
Query: 622 KKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENVMPQKRKR 485
K+V +ES G +G+D + +S +E+G + S+ + +KR+R
Sbjct: 854 KQVAESES-GSSSGSDSSDSESESESGSSSSSSSDESDREKRKRRR 898
>At1g01490.1 68414.m00065 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 177
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Frame = -1
Query: 667 PQLSPXESPVKKS----PAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASE-NVM 503
P+ E P K+ P K+ EA + GK+ G E+ E GD +E +
Sbjct: 74 PEKEKKEEPKKEGGGEPPKKEGEAPKEEGKKEGEAPKKEEEKKEGGDKKEGEKKDQPQAQ 133
Query: 502 PQ 497
PQ
Sbjct: 134 PQ 135
>At5g64030.1 68418.m08039 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 829
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -1
Query: 673 SNPQLSPXESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN---GDAEESNDASEN 509
S+ Q + E +K+ + ++E+ + G ++ +DS +EN GD +E D +N
Sbjct: 103 SSKQDNQEEKKEEKTKEEFTPSSETKSETEGGEDQKDDSKSENGGGGDLDEKKDLKDN 160
>At4g00610.1 68417.m00085 DNA-binding storekeeper protein-related
similar to storekeeper protein GI:14268476 [Solanum
tuberosum]
Length = 328
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = -1
Query: 673 SNPQLSPXESPVKK-----SPAKK-VEAAESNGKENGTDEAPEDSPAENGDAEESNDASE 512
++ +LS SP KK SP KK +EA S E ++ P S +E+G ES+ +E
Sbjct: 51 TSKKLSGVASPAKKPSGVTSPVKKPLEAVASTSSEEEEEDEPS-SDSESGSESESDTEAE 109
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = -1
Query: 658 SPXESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENVMPQKR 491
S + V+++ K E + KEN + + E + EESN E + Q++
Sbjct: 641 SEKKEQVEENEKKTDEDTSESSKENSVSDTEQKQSEETSEKEESNKNGETEVTQEQ 696
>At1g76185.1 68414.m08847 expressed protein
Length = 106
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 419 SSREWSFLLFLHQEPQISSSHQSLSF--LWHHVLRCIVAFFGITIFSRRIFWGFI 577
S +W+ + F SSS + +W V+ +V F ++++ RR+ FI
Sbjct: 18 SKHDWASVSFFSSTSNFSSSRVDVVVFVIWELVMLALVVFSAVSLYFRRLQLAFI 72
>At5g19950.3 68418.m02375 expressed protein
Length = 441
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = -1
Query: 649 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 545
ES VK + +K E++E +G + GT++ + +PA++
Sbjct: 237 ESSVKHAGGEKGESSEVDGNKRGTNKNIQRNPADS 271
>At5g19950.2 68418.m02374 expressed protein
Length = 443
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = -1
Query: 649 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 545
ES VK + +K E++E +G + GT++ + +PA++
Sbjct: 237 ESSVKHAGGEKGESSEVDGNKRGTNKNIQRNPADS 271
>At5g19950.1 68418.m02373 expressed protein
Length = 443
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = -1
Query: 649 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 545
ES VK + +K E++E +G + GT++ + +PA++
Sbjct: 237 ESSVKHAGGEKGESSEVDGNKRGTNKNIQRNPADS 271
>At4g01590.1 68417.m00207 expressed protein
Length = 200
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Frame = -1
Query: 712 RRTRRQEGXAPWGSNPQLSPXESPVKKSPAKKVEAAESNGKENGTDE----APEDSPAEN 545
RR +R A W L + K KVE E KE G D+ E ++N
Sbjct: 115 RREQRPVKRAKWSQEADLQKLDVFEKLEAKFKVEGKEE--KEEGEDDEEVVESEGEESDN 172
Query: 544 GDAEESNDASEN 509
GD +++ D ++
Sbjct: 173 GDYDQNQDFDDD 184
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = -1
Query: 637 KKSPAKKVEAAESNG----KENGTDEAPEDSPAENGDAEESNDAS-ENVMPQKRK 488
+K+ KKVE++ S+ +E T E P E+ EE + +S E + P K++
Sbjct: 55 EKTVPKKVESSSSDASDSDEEEKTKETPSKLKDESSSEEEDDSSSDEEIAPAKKR 109
>At1g77850.1 68414.m09072 transcriptional factor B3 family protein
similar to auxin response factor 10 GI:6165644 from
[Arabidopsis thaliana]; contains Pfam profile PF02362:
B3 DNA binding domain
Length = 585
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -1
Query: 625 AKKVEAAESNGKENGTDEAPEDSPAENGDAEE--SNDASEN 509
+KKV + + GK +E E PAE+G EE S ++S+N
Sbjct: 518 SKKVNSIQLFGKIITVEEHSESGPAESGLCEEDGSKESSDN 558
>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
to GB:P51413 from [Arabidopsis thaliana]; similar to
ESTs gb|L33542 and gb|AA660016
Length = 176
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Frame = -1
Query: 733 NLPCNNGRRTRRQEGXA-PWGSNPQ-----LSPXESPVKKSPAKKVEAAESNG 593
N RRT R G P+ SNP LS E PVKK P ++ A G
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKSKKG 173
>At1g07620.1 68414.m00817 GTP1/OBG family protein similar to
SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
subtilis}; contains Pfam profile PF01018: GTP1/OBG
family
Length = 1016
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Frame = -1
Query: 679 WGSNPQLSPXESPVKKSPAKKVEAAESNGKENGTD--------EAPEDSPAENGDAEESN 524
+G+ + ESPV+ +K E E +EN D + P+ P+ N AE+
Sbjct: 283 FGAKKSVLSSESPVRAEKEEKYEVQEERSQENHLDSSNQRILQQEPDSVPSTNKTAEK-- 340
Query: 523 DASENVMPQ 497
+E ++PQ
Sbjct: 341 --TETLLPQ 347
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,001,150
Number of Sequences: 28952
Number of extensions: 284628
Number of successful extensions: 1110
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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