Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0231.Seq
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   7.1  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   7.1  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    21   9.4  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -1

Query: 275  SISTIWNKTARELWHGKTNDWILSCRIQIDRSP 177
            S+   W   ARE W+G    + +  R+     P
Sbjct: 1011 SLVVYWKPPAREEWNGDILGYYVGYRLANSDKP 1043


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 209 ESNHSFYRARVLLQFCSKLLRSIKPSFVSAILI 307
           ES  S Y+A    QF + L RSI   F   +LI
Sbjct: 383 ESFKSPYKASCWAQFKAVLWRSILAVFKEPLLI 415


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 209 ESNHSFYRARVLLQFCSKLLRSIKPSFVSAILI 307
           ES  S Y+A    QF + L RSI   F   +LI
Sbjct: 383 ESFKSPYKASCWAQFKAVLWRSILAVFKEPLLI 415


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = -3

Query: 435 CFGPRRLFTHVPTTLRPQKVALFVSSRETETQLAPWRE 322
           C GP       P TLR Q+   F          AP R+
Sbjct: 62  CCGPFGCLVGTPETLRCQREGFFHEREPCIAGSAPCRK 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,843
Number of Sequences: 336
Number of extensions: 3103
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)