Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0231.Seq
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    29   0.83 
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    26   4.4  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    26   4.4  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   7.7  
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    25   7.7  

>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 155 GSGNIISEDSGQFGYGRKESNHSFYRARVLLQFCSKLLRSIKPSFVSAILIISEL 319
           G+ N + ++  +     KE +HS     +L Q   +L+  + P F+SA+  I E+
Sbjct: 26  GNNNKLKDEHYKHNEASKEPSHSISGGLMLNQQDRQLIEPLNPDFLSAVDSILEI 80


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 147 SSKVVATSSARTPVNLDTAGKNPIIRFTVP 236
           SS     S+A + +N+DTAG+ P     +P
Sbjct: 571 SSTPAQQSAAGSSINVDTAGRQPSDEINIP 600


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 401 GTWVKRRRGPKHLQEKLLRRCVLYSSIQICKCRFGRSXRERCTPSSMCRQN 553
           G+  KRRRG +    K +R+ + Y +     C FGR  R      S+ R +
Sbjct: 60  GSKPKRRRGERIPPSKRIRKAIAYVNKYASGC-FGRVERRLVCTRSISRHS 109


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 497 DIYRSESKSIIRSAVGASPEDVLVLGA 417
           ++ RS SKS  RSA G++ ED+ + G+
Sbjct: 117 NVKRSASKSPKRSANGSTSEDISIEGS 143


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 178 LADDVATTLLLHQ-YGAWSFWDYTLVAPSS 92
           L+  VAT  ++H  Y   S WDY +V+PSS
Sbjct: 238 LSSSVAT--IIHDAYVDLSIWDYGVVSPSS 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,464
Number of Sequences: 5004
Number of extensions: 51322
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)