Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0231.Seq
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0683 - 5595121-5596186,5597214-5597219,5597923-5598836 48 7e-06
01_06_0584 - 30407012-30408531,30408625-30408955 47 2e-05
12_01_0567 + 4641223-4641326,4641700-4642440,4642534-4642735,464... 44 1e-04
12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457... 42 3e-04
01_06_0633 - 30741716-30742432 31 0.64
03_04_0196 - 18365840-18366701,18366875-18366950,18366989-183672... 30 1.5
02_05_0852 - 32218230-32218366,32218457-32218545,32218653-322187... 30 1.5
11_04_0318 + 16336356-16336358,16337254-16337484,16337580-163376... 30 2.0
12_01_0454 + 3580332-3581714 29 2.6
01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-19... 29 2.6
11_01_0218 - 1704459-1704629,1704895-1705119,1705120-1705277,170... 29 4.5
01_01_0340 + 2727135-2727205,2727470-2727639,2728418-2728506,272... 29 4.5
01_06_1495 + 37769982-37771496 28 6.0
03_06_0607 + 35037467-35038624 28 7.9
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100... 28 7.9
>11_01_0683 - 5595121-5596186,5597214-5597219,5597923-5598836
Length = 661
Score = 48.0 bits (109), Expect = 7e-06
Identities = 30/73 (41%), Positives = 42/73 (57%)
Frame = -2
Query: 220 MIGFFPAVSKLTGVLADDVATTLLLHQYGAWSFWDYTLVAPSSTVEMNPVIPGVEDEMVK 41
M+G F A S +TGVL D A LLHQ+GA++ +D+ VE++ + PG E+
Sbjct: 267 MLGSFSACSNVTGVLTDTRAVARLLHQHGAFACFDFAARNSGPYVEID-MRPG---EVDG 322
Query: 40 KDAVFFNCEKFXG 2
DAVF + KF G
Sbjct: 323 YDAVFLSPHKFVG 335
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -3
Query: 426 PRRLFTHVPTTLRPQ-KVALFVSSRETETQLAPWREFNSEIIKIAETKEGFIDLNNLEQ 253
P L LRP+ + +FV E + L WR ++++++ +G +DL L +
Sbjct: 197 PGPLRERAAALLRPEERWVVFVGPYEHHSNLLSWRRSLADVVEVGAGDDGLLDLAALRR 255
>01_06_0584 - 30407012-30408531,30408625-30408955
Length = 616
Score = 46.8 bits (106), Expect = 2e-05
Identities = 28/73 (38%), Positives = 39/73 (53%)
Frame = -2
Query: 220 MIGFFPAVSKLTGVLADDVATTLLLHQYGAWSFWDYTLVAPSSTVEMNPVIPGVEDEMVK 41
M+G F A S +TG+ D A LLH YGA++ +D+ AP ++M G ED
Sbjct: 241 MLGSFSACSNVTGIRTDTRAVARLLHGYGAYACFDFACSAPYVGIDMR---SGEEDGY-- 295
Query: 40 KDAVFFNCEKFXG 2
DAV+ + KF G
Sbjct: 296 -DAVYLSPHKFLG 307
>12_01_0567 +
4641223-4641326,4641700-4642440,4642534-4642735,
4642830-4643285,4643382-4643774,4643868-4643870,
4645366-4645417,4645929-4646023
Length = 681
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/73 (32%), Positives = 38/73 (52%)
Frame = -2
Query: 220 MIGFFPAVSKLTGVLADDVATTLLLHQYGAWSFWDYTLVAPSSTVEMNPVIPGVEDEMVK 41
M+G F A S +TG++ D +LHQ+GA++ +D+ P ++M E+
Sbjct: 244 MLGSFSACSNVTGIVVDTREIARVLHQHGAFACFDFAASGPHVKIDMK------SGEIDG 297
Query: 40 KDAVFFNCEKFXG 2
DAVF + KF G
Sbjct: 298 YDAVFLSPHKFIG 310
>12_01_0564 -
4567650-4568063,4568154-4568624,4568722-4568923,
4570395-4571104
Length = 598
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = -2
Query: 220 MIGFFPAVSKLTGVLADDVATTLLLHQYGAWSFWDYTLVAPSSTVEMNPVIPGVEDEMVK 41
M+G F A S +TG+ D +LHQ+GA++ +D+ P ++M E+
Sbjct: 199 MLGSFSACSNVTGIAVDTRELARVLHQHGAFACFDFAASGPYVKIDMK------SGEVDG 252
Query: 40 KDAVFFNCEKFXG 2
DAVF + KF G
Sbjct: 253 YDAVFLSPHKFVG 265
>01_06_0633 - 30741716-30742432
Length = 238
Score = 31.5 bits (68), Expect = 0.64
Identities = 21/43 (48%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Frame = -1
Query: 467 IRSAVGASPEDVLVLGAS----LPMFLRXCGR---RRWLCSCL 360
+ +A G SP VL LGAS LP R CGR RR C CL
Sbjct: 142 VAAAPGWSPSSVLGLGASNKLRLPSLGRRCGRVLPRRLSCKCL 184
>03_04_0196 -
18365840-18366701,18366875-18366950,18366989-18367237,
18367819-18367837
Length = 401
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 20 VKEHRILFDHLILHSRNYRVHLHGRGGSNQCVVPERPGSVLMEQQ 154
++ +R+L D H+R Y L + G C V + PGS L+ Q
Sbjct: 64 IQAYRMLKDRSFAHTRAYDPELLQKIGWENCAVVDEPGSHLLTLQ 108
>02_05_0852 -
32218230-32218366,32218457-32218545,32218653-32218757,
32218899-32219011,32219089-32219157,32219616-32219748,
32219849-32220057
Length = 284
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -2
Query: 202 AVSKLTGVLADDVATTLLLHQYGAWS 125
A++ + G+LA DVA+ ++ YGAWS
Sbjct: 103 AMAGVAGILATDVASWYVMLSYGAWS 128
>11_04_0318 +
16336356-16336358,16337254-16337484,16337580-16337654,
16337741-16337839,16339010-16339121,16339586-16339713,
16340022-16340141,16340967-16341047,16341460-16341537,
16341616-16341708,16341880-16341934,16342795-16342871,
16343008-16343079,16343159-16343242,16343620-16343739,
16343824-16343892,16344721-16344798,16345684-16345822,
16345990-16346154,16346239-16346384,16346501-16346680,
16346834-16346922,16346997-16347028,16347120-16347226
Length = 810
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 199 RQERIQSFVLPCQSSLAVLFQIVEIDKTFFCF 294
R+ R+ + LPC + L+ LF+ +++ F CF
Sbjct: 537 RRIRVMNLSLPCTNMLSNLFRYADLETQFTCF 568
>12_01_0454 + 3580332-3581714
Length = 460
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 419 ASLPMFLRXCGRRRWLCSC 363
A L + CGR RWLCSC
Sbjct: 328 ADLKTHEKHCGRDRWLCSC 346
>01_01_0025 +
188915-189132,190625-190705,191350-191506,191958-192161,
192248-192356,192401-192496,192724-193994,194200-194384,
194619-195055,197034-197077,197830-199036,199253-199479
Length = 1411
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = +2
Query: 254 CSK--LLRSIKPSFVSAILIISELNSLHGASWVSVSREDTNKATFCGRXVVG-TWVKR 418
C K ++ + S +S +++ +E +SLH +SW + + T++ + GR ++ WV R
Sbjct: 223 CGKAPIVHFVDTSELSKLVLAAE-SSLHSSSWEMQANKITSEHDYSGRFIIDLQWVSR 279
>11_01_0218 -
1704459-1704629,1704895-1705119,1705120-1705277,
1705378-1705463,1705574-1705823,1706220-1707246
Length = 638
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/52 (38%), Positives = 22/52 (42%)
Frame = -2
Query: 442 LKMFWSSAPLYPCSYDXAAAEGGFVRVFTGNGDPTXXMEGIQFRDN*DSRNK 287
L MF S+ P S AAA G V VF G G +G Q D NK
Sbjct: 304 LHMFVWSSSASPVSERAAAAAAGAVHVFGGGGADHGDAKGAQAYDEYSFGNK 355
>01_01_0340 +
2727135-2727205,2727470-2727639,2728418-2728506,
2729017-2729070,2729310-2729380,2729504-2729585,
2729678-2729774,2729902-2729972
Length = 234
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = -1
Query: 539 CY*VYSALVXSGQSDIYRSESKSIIRSAVGASPEDVLVLGASLPMFLRXCGRRRWL 372
CY + AL+ G +Y + + ++ + A E VLV +SLP+F+R R R L
Sbjct: 29 CY-MTLALLDKGHEAVYAAIERPLLFTQTAAILE-VLVFPSSLPLFIRENWRLRGL 82
>01_06_1495 + 37769982-37771496
Length = 504
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 419 ASLPMFLRXCGRRRWLCSC 363
A L + CGR +WLCSC
Sbjct: 365 ADLKTHEKHCGRDKWLCSC 383
>03_06_0607 + 35037467-35038624
Length = 385
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 419 ASLPMFLRXCGRRRWLCSC 363
A L + CGR RW+CSC
Sbjct: 271 ADLRTHEKHCGRDRWVCSC 289
>01_06_0004 +
25507739-25508206,25509346-25509477,25509910-25510086,
25510175-25510219,25510305-25510512,25510766-25510825,
25510826-25511016,25511219-25511614
Length = 558
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 449 LLRRCVLYSSIQICKCRFGRSXRERCTPSSMCRQN 553
LL L S+I +C R G+ R R +PSS +N
Sbjct: 13 LLVLLALCSTIDVCDARRGKHWRPRSSPSSSLLRN 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,811,723
Number of Sequences: 37544
Number of extensions: 381478
Number of successful extensions: 1056
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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