Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0231.Seq
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39376| Best HMM Match : Alpha-amylase_C (HMM E-Value=0.49)          60   2e-09
SB_58405| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   8e-07
SB_39600| Best HMM Match : Sushi (HMM E-Value=0)                       29   2.7  
SB_17900| Best HMM Match : CbiQ (HMM E-Value=0.33)                     28   6.1  
SB_26565| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_24324| Best HMM Match : PDZ (HMM E-Value=0.013)                     28   8.1  

>SB_39376| Best HMM Match : Alpha-amylase_C (HMM E-Value=0.49)
          Length = 679

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 26/62 (41%), Positives = 38/62 (61%)
 Frame = -2

Query: 253 KLQENSGTVKRMIGFFPAVSKLTGVLADDVATTLLLHQYGAWSFWDYTLVAPSSTVEMNP 74
           KLQ +  + +++IG F A S +TG+L D  + T  LH++GA + WDY    P   + MNP
Sbjct: 156 KLQTSISSGRQLIGCFAAASNVTGILVDTNSITACLHRHGALALWDYATAGPYIEINMNP 215

Query: 73  VI 68
           VI
Sbjct: 216 VI 217


>SB_58405| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 757

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 22/59 (37%), Positives = 34/59 (57%)
 Frame = -2

Query: 208 FPAVSKLTGVLADDVATTLLLHQYGAWSFWDYTLVAPSSTVEMNPVIPGVEDEMVKKDA 32
           F A S +TG+L D  A + + H+YG  +FWDY   +P  T+ MN    G   E+ +K++
Sbjct: 322 FSAASNVTGILTDTKAVSEMCHKYGGLAFWDYASASPYITINMNATPTGKAFEVWRKNS 380


>SB_39600| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1368

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 458 RCVLYSSIQICKCRFGRSXRERCTPSSMCR 547
           +C  Y S+ + +C  G    + C P+ MCR
Sbjct: 602 KCERYPSMDVSQCSMGCDVDQDCPPNHMCR 631


>SB_17900| Best HMM Match : CbiQ (HMM E-Value=0.33)
          Length = 766

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +2

Query: 284 SFVSAILIISELNSLHGASWVSVSREDTNKATFCGRXVVGTWVKRRRGPKHLQEKLLR 457
           + +  +L++ E    HG +  S+SR++T+     G   V   VK + G +  +EKL +
Sbjct: 10  AILCVLLLLQEFGQAHGPASRSLSRKETSGEDSEGVTPVKDDVKNKPGREPAKEKLYK 67


>SB_26565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 202 AVSKLTGV-LADDVATTLLLHQYGAWSFWDYTLVAPSSTVEMNPVIP 65
           AV +LTG  L     T +  H YG     +YT++A  S + + P  P
Sbjct: 43  AVQRLTGATLLSTFTTDIPEHWYGQLDSIEYTVIANKSYLHLIPTQP 89


>SB_24324| Best HMM Match : PDZ (HMM E-Value=0.013)
          Length = 406

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 56  LHSRNYRVHLHGRGGSNQCVVPE-RPGSVLMEQQGSGNIISEDS 184
           L S   RV L    G +  +VPE  PG+V +   GSG  +SE+S
Sbjct: 192 LRSMGDRVTLLVCDGYDPSIVPEAHPGNVPVMSIGSGRSVSEES 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,921,765
Number of Sequences: 59808
Number of extensions: 400875
Number of successful extensions: 1029
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)