Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0231.Seq
         (683 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119661-1|AAM50315.1|  727|Drosophila melanogaster SD05527p pro...    31   1.5  
AF057167-1|AAD09429.1|  270|Drosophila melanogaster DEAD-box pro...    31   1.5  
AE014296-3658|AAF51814.1|  727|Drosophila melanogaster CG9054-PA...    31   1.5  
AE013599-3473|AAF46905.1| 1091|Drosophila melanogaster CG3622-PB...    29   4.5  
AY089574-1|AAL90312.1|  548|Drosophila melanogaster RE10012p pro...    29   7.8  
AF118857-1|AAF12733.1|  548|Drosophila melanogaster zinc finger ...    29   7.8  
AE014134-2601|AAF53461.1|  548|Drosophila melanogaster CG4158-PA...    29   7.8  

>AY119661-1|AAM50315.1|  727|Drosophila melanogaster SD05527p
           protein.
          Length = 727

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 416 SLPMFLRXCGRRRWLCSCLHGKRRP 342
           +L  FLR  G + + C CLHG R+P
Sbjct: 520 NLERFLRQRGGKHYSCVCLHGDRKP 544


>AF057167-1|AAD09429.1|  270|Drosophila melanogaster DEAD-box
           protein protein.
          Length = 270

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 416 SLPMFLRXCGRRRWLCSCLHGKRRP 342
           +L  FLR  G + + C CLHG R+P
Sbjct: 63  NLERFLRQRGGKHYSCVCLHGDRKP 87


>AE014296-3658|AAF51814.1|  727|Drosophila melanogaster CG9054-PA
           protein.
          Length = 727

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 416 SLPMFLRXCGRRRWLCSCLHGKRRP 342
           +L  FLR  G + + C CLHG R+P
Sbjct: 520 NLERFLRQRGGKHYSCVCLHGDRKP 544


>AE013599-3473|AAF46905.1| 1091|Drosophila melanogaster CG3622-PB,
           isoform B protein.
          Length = 1091

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 340 LGLRFP*RHEQSHLLRPQXRRNMGKEAPRTKTSSGEAPTALRIILF-DSDL 489
           L LRF  RH   H    Q RR    +APR++ S       +   +F DSDL
Sbjct: 248 LRLRFQPRHHHPHQHHQQRRRRYIGDAPRSRWSDIPEELFIETAIFVDSDL 298


>AY089574-1|AAL90312.1|  548|Drosophila melanogaster RE10012p
           protein.
          Length = 548

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 554 RSADTCY*VYSALVXSGQSDIYRSESKSIIRSAVGAS 444
           +  + CY  Y+ LV   Q+  Y S    IIRS  G S
Sbjct: 271 QQCNKCYATYAGLVKHQQTHAYESTEYKIIRSQPGGS 307


>AF118857-1|AAF12733.1|  548|Drosophila melanogaster zinc finger
           protein Worniu protein.
          Length = 548

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 554 RSADTCY*VYSALVXSGQSDIYRSESKSIIRSAVGAS 444
           +  + CY  Y+ LV   Q+  Y S    IIRS  G S
Sbjct: 271 QQCNKCYATYAGLVKHQQTHAYESTEYKIIRSQPGGS 307


>AE014134-2601|AAF53461.1|  548|Drosophila melanogaster CG4158-PA
           protein.
          Length = 548

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 554 RSADTCY*VYSALVXSGQSDIYRSESKSIIRSAVGAS 444
           +  + CY  Y+ LV   Q+  Y S    IIRS  G S
Sbjct: 271 QQCNKCYATYAGLVKHQQTHAYESTEYKIIRSQPGGS 307


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,923,862
Number of Sequences: 53049
Number of extensions: 601675
Number of successful extensions: 1661
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)