Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0231.Seq
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024202-8|AAK93869.2|  816|Caenorhabditis elegans Hypothetical ...    50   2e-06
U41275-3|AAA82466.1|  612|Caenorhabditis elegans Hypothetical pr...    33   0.25 
Z81527-16|CAB04280.1|  915|Caenorhabditis elegans Hypothetical p...    28   5.4  
Z81527-15|CAB04279.1|  927|Caenorhabditis elegans Hypothetical p...    28   5.4  
Z81110-8|CAB03263.1|  915|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81110-7|CAB03262.1|  927|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81062-7|CAB02942.1|  755|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U23412-3|AAK21466.1|  301|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z73105-2|CAA97439.2|  803|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AL132863-4|CAB60575.1|  410|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AC024202-8|AAK93869.2|  816|Caenorhabditis elegans Hypothetical
           protein Y71H2B.5 protein.
          Length = 816

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 30/84 (35%), Positives = 45/84 (53%)
 Frame = -2

Query: 253 KLQENSGTVKRMIGFFPAVSKLTGVLADDVATTLLLHQYGAWSFWDYTLVAPSSTVEMNP 74
           +++E+ G++K +IG F A S LTG+L D    T +L  + A + WD+   AP   + +N 
Sbjct: 55  EIRESHGSIK-IIGTFCAASNLTGILIDIQNVTKILKMFDAIAIWDFASAAPYIPILVNG 113

Query: 73  VIPGVEDEMVKKDAVFFNCEKFXG 2
             P         DAVFF+  KF G
Sbjct: 114 TYP--------LDAVFFSGHKFPG 129



 Score = 33.1 bits (72), Expect = 0.19
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -3

Query: 384 QKVALFVSSRETETQLAPWREFNSEIIKIAETKEGFIDLNNLEQNCK 244
           ++V +  SS+E  + L PWR+   E   I E + G IDL +L+   K
Sbjct: 8   EEVIVVHSSQEHHSNLLPWRKIAKECRNIEELENGQIDLVHLQNVLK 54


>U41275-3|AAA82466.1|  612|Caenorhabditis elegans Hypothetical
           protein T25D1.1 protein.
          Length = 612

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 19/73 (26%), Positives = 28/73 (38%)
 Frame = +2

Query: 350 VSREDTNKATFCGRXVVGTWVKRRRGPKHLQEKLLRRCVLYSSIQICKCRFGRSXRERCT 529
           +SR       F  R    +  +  RG      +LLR    +   +IC C         CT
Sbjct: 499 LSRIQHQNLKFWRREPEWSCARTNRGSYSAPTRLLRAATKFCKAEICVCNLPPRCLRTCT 558

Query: 530 PSSMCRQNVSNDV 568
           P+ +   + SNDV
Sbjct: 559 PTRLQLPSASNDV 571


>Z81527-16|CAB04280.1|  915|Caenorhabditis elegans Hypothetical
           protein T01D3.6b protein.
          Length = 915

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = -2

Query: 145 HQY-GAWSFWDYTLVAPS-ST--VEMNPVIPGVEDEMVKKDAVFFNCEK 11
           H Y   W+ WD T   P  ST  +E    IP      ++ DA+++ C K
Sbjct: 803 HYYQDGWARWDLTQNGPKFSTWDIEAQTTIPPTLRAKMEGDAIYYTCSK 851


>Z81527-15|CAB04279.1|  927|Caenorhabditis elegans Hypothetical
           protein T01D3.6a protein.
          Length = 927

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = -2

Query: 145 HQY-GAWSFWDYTLVAPS-ST--VEMNPVIPGVEDEMVKKDAVFFNCEK 11
           H Y   W+ WD T   P  ST  +E    IP      ++ DA+++ C K
Sbjct: 815 HYYQDGWARWDLTQNGPKFSTWDIEAQTTIPPTLRAKMEGDAIYYTCSK 863


>Z81110-8|CAB03263.1|  915|Caenorhabditis elegans Hypothetical
           protein T01D3.6b protein.
          Length = 915

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = -2

Query: 145 HQY-GAWSFWDYTLVAPS-ST--VEMNPVIPGVEDEMVKKDAVFFNCEK 11
           H Y   W+ WD T   P  ST  +E    IP      ++ DA+++ C K
Sbjct: 803 HYYQDGWARWDLTQNGPKFSTWDIEAQTTIPPTLRAKMEGDAIYYTCSK 851


>Z81110-7|CAB03262.1|  927|Caenorhabditis elegans Hypothetical
           protein T01D3.6a protein.
          Length = 927

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = -2

Query: 145 HQY-GAWSFWDYTLVAPS-ST--VEMNPVIPGVEDEMVKKDAVFFNCEK 11
           H Y   W+ WD T   P  ST  +E    IP      ++ DA+++ C K
Sbjct: 815 HYYQDGWARWDLTQNGPKFSTWDIEAQTTIPPTLRAKMEGDAIYYTCSK 863


>Z81062-7|CAB02942.1|  755|Caenorhabditis elegans Hypothetical
           protein F15A4.8a protein.
          Length = 755

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 106 PMCSPRKTRLRIDGAAR*WQHHQRGLRS 189
           PMC P K  L I   AR W+H +  L S
Sbjct: 254 PMCDPSKLNLVIPFYARRWEHVKESLDS 281


>U23412-3|AAK21466.1|  301|Caenorhabditis elegans Hypothetical
           protein T10F2.2 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 488 CKCRFGRSXRERCTPSSMCR 547
           CK +  R  +++CTP S+CR
Sbjct: 145 CKLQAAREMKKKCTPFSVCR 164


>Z73105-2|CAA97439.2|  803|Caenorhabditis elegans Hypothetical
           protein R13.4 protein.
          Length = 803

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 128 PGSVLMEQQGSGNIISEDSGQFGYGRKESNHSFYRARVLLQ 250
           PG +    Q  G   S    Q  YG+ E NH+ Y  R++ Q
Sbjct: 198 PGQMNGPPQHPGMQYSGQMQQLPYGQMEGNHAMYDQRIMGQ 238


>AL132863-4|CAB60575.1|  410|Caenorhabditis elegans Hypothetical
           protein Y37H2A.6 protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 29  HRILFDHLILHSRNYRVHLHGRGGSNQCVVP 121
           HR+ F+  + +++N+  +L  R   +QC VP
Sbjct: 379 HRLRFEKRVTNTKNFSSYLRYRFAEHQCDVP 409


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,599,161
Number of Sequences: 27780
Number of extensions: 295362
Number of successful extensions: 856
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)