Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0230.Seq
(517 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal prote... 75 3e-14
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr... 29 2.0
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr... 29 2.0
AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical ... 28 3.4
Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical pr... 28 4.6
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr... 28 4.6
AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical... 27 6.0
AC024863-1|AAF60877.1| 481|Caenorhabditis elegans Prion-like-(q... 27 6.0
U39741-3|AAA80430.1| 163|Caenorhabditis elegans Hypothetical pr... 27 8.0
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 27 8.0
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 27 8.0
U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linke... 27 8.0
AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-lin... 27 8.0
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 27 8.0
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe... 27 8.0
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 27 8.0
>U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 12 protein.
Length = 140
Score = 74.9 bits (176), Expect = 3e-14
Identities = 31/57 (54%), Positives = 42/57 (73%)
Frame = +2
Query: 254 QHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDY 424
+HQIPL+KV + K +GE+ GLCK DK+GKARK+VGCS V+ ++G E +L DY
Sbjct: 79 EHQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVTNWGNEEQGRAILTDY 135
Score = 72.1 bits (169), Expect = 2e-13
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = +3
Query: 24 MADVEVEVPTNPI-LSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVL 200
M+D +V P ++ MD AL+ VL+ A GL GLHE KALDKR+A CVL
Sbjct: 1 MSDAGGDVQVAPAAVAQGPMDKEGALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVL 60
Query: 201 AENCDEAAYKKLVQALC 251
AENCDE Y KLV+ LC
Sbjct: 61 AENCDEPQYVKLVETLC 77
>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
protein C30G12.6a protein.
Length = 1100
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 230 LVCGFITVLSQNT*YCLPLVKSFSGFVK 147
L+C I ++ Q + CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845
>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
protein C30G12.6b protein.
Length = 1097
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 230 LVCGFITVLSQNT*YCLPLVKSFSGFVK 147
L+C I ++ Q + CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845
>AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.9 protein.
Length = 448
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 129 GGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKL 236
GGLV G+ A KAL V+ V++E C +A K L
Sbjct: 216 GGLVAGVATAVKALSPTTEVIGVVSETC-QAIVKSL 250
>Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical
protein T04D3.2 protein.
Length = 604
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 84 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAY 227
V VAL + T LIH +H L++ K L V C+L ++ +A Y
Sbjct: 16 VVVALSDRQYTFLIHS-FIHSLYQHTKRLLFSDFVSCLLPKHLQQAMY 62
>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
protein C06E1.10 protein.
Length = 1148
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 314 LCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKD 421
L K K+ K +K+ + ++DF EETP + +D
Sbjct: 488 LVKGTKEWKEKKVEAAKSIKLEDFKEETPETEDFED 523
>AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical
protein F25G6.1 protein.
Length = 560
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 57 PILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKAL 170
P+ +G + E+L+T +I +HG EAAKAL
Sbjct: 122 PVDNGKKKRLTAKECEILRTMVIPHRNIHGAMEAAKAL 159
>AC024863-1|AAF60877.1| 481|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 89,
isoform a protein.
Length = 481
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 142 CTRPPW-IKAVFSTSCSATFTSMLLPDKMGLVGTSTSTSAMVVDYLT 5
C PW IK +T C S+L P + GLVG T+ +++ LT
Sbjct: 331 CKNCPWGIKD--NTYCQDDHGSVLDPSEAGLVGMGWRTATIILAILT 375
>U39741-3|AAA80430.1| 163|Caenorhabditis elegans Hypothetical
protein F12D9.2 protein.
Length = 163
Score = 27.1 bits (57), Expect = 8.0
Identities = 31/109 (28%), Positives = 46/109 (42%)
Frame = +3
Query: 81 DVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNNI 260
D+N ++ LKT + G L A +AL KR L +L D A KK+ Q
Sbjct: 54 DLNTSIINWLKTGIEEGDLEGAAQRAIEALRKRNEELKLL--EMDPNAMKKVEQ------ 105
Query: 261 RFHWSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKISARKLQRW 407
+ LT + SARL + +L+AA S S + ++W
Sbjct: 106 ---FETLTAIMGSSSSTDSARLIAIL---QLTAADKTSRNSSQHQPKKW 148
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 27.1 bits (57), Expect = 8.0
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 15 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 179
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 27.1 bits (57), Expect = 8.0
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 15 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 179
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform c protein.
Length = 622
Score = 27.1 bits (57), Expect = 8.0
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 15 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 179
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1c protein.
Length = 622
Score = 27.1 bits (57), Expect = 8.0
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 15 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 179
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 27.1 bits (57), Expect = 8.0
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 15 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 179
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
spermatogenesis protein15 protein.
Length = 1219
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +3
Query: 270 WSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKISARKLQRWMC 413
+ RL G V+AR+T +A G A S ++ R W C
Sbjct: 11 FGRLVWISDEAEGFVAARITDIAENGFTLATEKTSETVNRRYEDTWAC 58
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 27.1 bits (57), Expect = 8.0
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 15 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 179
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,082,884
Number of Sequences: 27780
Number of extensions: 222094
Number of successful extensions: 637
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -