Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0229.Seq
         (901 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           34   0.18 
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    31   1.2  
11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371     30   2.2  
05_03_0258 - 11153709-11156090                                         30   2.9  
10_01_0340 - 3734116-3734178,3734212-3734300,3734785-3734844,373...    29   5.0  
12_01_0943 - 9324181-9325095,9326671-9326853                           29   6.7  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 503 ESITIHWPSFYNVV-TGKTLALPNLIALQH 589
           ESI+  W  F N+V +G TL++PN + LQH
Sbjct: 67  ESISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 500 SESITIHWPSFYNVV-TGKTLALPNLIALQH 589
           +ESI   W  F N+V +G TL+LP  + LQH
Sbjct: 126 NESIGAAWSRFTNLVQSGPTLSLPEYVLLQH 156


>11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371
          Length = 680

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 503 ESITIHWPSFYNVV-TGKTLALPNLIALQH 589
           ESI   W  F N+V +G TL+LP  + LQH
Sbjct: 408 ESIGAAWSRFTNLVQSGLTLSLPEYVLLQH 437


>05_03_0258 - 11153709-11156090
          Length = 793

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 698 NINAYNLPFAHFXCATVGKGRSVRASSLLRQLAKGGCAARRLSWVT 561
           N+N YNL F         K R      +L ++++ GC   R++W T
Sbjct: 390 NVNTYNLIFGMLG----KKSRFTAMLEMLEEMSRSGCTPNRVTWNT 431


>10_01_0340 -
           3734116-3734178,3734212-3734300,3734785-3734844,
           3736188-3736245,3736507-3736893,3736942-3737615,
           3739154-3739203,3739903-3739943,3740721-3740860,
           3740903-3741183,3741405-3741613
          Length = 683

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 500 SESITIHWPSFYNVV-TGKTLALPNLIALQH 589
           +ESI   W  F N++ +G TL+LP  + LQH
Sbjct: 274 NESIGAAWSRFTNLLQSGPTLSLPEYMLLQH 304


>12_01_0943 - 9324181-9325095,9326671-9326853
          Length = 365

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 500 SESITIHWPSFYNVV-TGKTLALPNLIALQHIPLS 601
           +ESI   W  F N+V +G  L+LP  + LQH   S
Sbjct: 191 NESIGAAWSRFTNLVQSGPILSLPEYVFLQHFHTS 225


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,390,261
Number of Sequences: 37544
Number of extensions: 498798
Number of successful extensions: 1282
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)