Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0229.Seq
         (901 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ...    30   2.0  
AL021481-7|CAA16331.3|  629|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z49070-4|CAE45098.2|  528|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z81523-2|CAB04248.1|  928|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z81523-1|CAB04241.1|  944|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
           protein Y54E2A.6 protein.
          Length = 1798

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 808 NPYLGLFFGFNKGILRFRPIWLKNELI*QKFNANFNKILTL--TICHSPI 665
           NPY GLFF F+    RFRP+ L  + I  +   NF   LTL   +C+  +
Sbjct: 281 NPYKGLFF-FDG---RFRPVPLTQKFIGTRKAGNFRDNLTLMDNVCYDEV 326


>AL021481-7|CAA16331.3|  629|Caenorhabditis elegans Hypothetical
           protein Y43F4B.2 protein.
          Length = 629

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +2

Query: 491 SPYSESITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIAL 643
           SP+ +  T + P ++ +   K+  L +L+  + I  SP G+  KR AP+ +
Sbjct: 145 SPFEDEETPYHPDWF-LTNSKSHVLRSLMHYRPIANSPRGISTKRGAPLVI 194


>Z49070-4|CAE45098.2|  528|Caenorhabditis elegans Hypothetical
           protein T09F3.5 protein.
          Length = 528

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/52 (36%), Positives = 22/52 (42%)
 Frame = -3

Query: 605 LAKGGCAARRLSWVTPGFSQSRRCKTTASEL*STHYRANWVPGPPGG*TLYY 450
           L K G   R+ S   P    S RCK    E  S  Y  +W  GP GG +  Y
Sbjct: 220 LDKNGNIVRQASKSWPIVYVSARCKQN-KEFVSAGYCTHWPDGPAGGKSFRY 270


>Z81523-2|CAB04248.1|  928|Caenorhabditis elegans Hypothetical
           protein F32H2.1b protein.
          Length = 928

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 475 GPGTQFAL**VDYNSLAVVLQRRDWENPGVTQLNRLAAHPPFASW 609
           G  T++A+    YN L     +  W N  V +L  L   P F SW
Sbjct: 229 GSRTEWAVKSKWYNELNPKWNKEHWSNEEVEKLKYLRESPKFVSW 273


>Z81523-1|CAB04241.1|  944|Caenorhabditis elegans Hypothetical
           protein F32H2.1a protein.
          Length = 944

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 475 GPGTQFAL**VDYNSLAVVLQRRDWENPGVTQLNRLAAHPPFASW 609
           G  T++A+    YN L     +  W N  V +L  L   P F SW
Sbjct: 229 GSRTEWAVKSKWYNELNPKWNKEHWSNEEVEKLKYLRESPKFVSW 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,814,276
Number of Sequences: 27780
Number of extensions: 411821
Number of successful extensions: 995
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)