Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0229.Seq
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.94 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.94 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   3.8  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   5.0  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   6.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 246 IPGVHRVLHHGNHDLVGLPSLAGSWKQE 329
           +PGV RVL +G   LV LP  A +++Q+
Sbjct: 75  VPGVRRVLRNGT--LVLLPFPAAAFRQD 100


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 246 IPGVHRVLHHGNHDLVGLPSLAGSWKQE 329
           +PGV RVL +G   LV LP  A +++Q+
Sbjct: 75  VPGVRRVLRNGT--LVLLPFPAAAFRQD 100


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -3

Query: 68  VHXQYLPLSRVVHHLHVVAFG 6
           ++ QY P+ R + H+ + +FG
Sbjct: 140 MNLQYFPMDRQLCHIEIESFG 160


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -3

Query: 68  VHXQYLPLSRVVHHLHVVAFG 6
           ++ QY P+ R + H+ + +FG
Sbjct: 140 MNLQYFPMDRQLCHIEIESFG 160


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -3

Query: 68  VHXQYLPLSRVVHHLHVVAFG 6
           ++ QY P+ R + H+ + +FG
Sbjct: 79  MNLQYFPMDRQLCHIEIESFG 99


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 155 THRRPAPRWSTATSHAKSTP 214
           T  RPA  + TATSH  S P
Sbjct: 23  TSHRPAWWFWTATSHEASAP 42


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 167 PAPRWSTATSHAKS 208
           P+P W T T  AK+
Sbjct: 132 PSPEWDTVTPEAKN 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,745
Number of Sequences: 438
Number of extensions: 5171
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)