Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0227.Seq
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    29   1.2  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   3.8  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    27   3.8  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    27   5.0  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   6.6  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   8.7  
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   8.7  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    26   8.7  

>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -2

Query: 165 CLINFRW*F---LRLPWLSRVTGNQGSIPEREPEKRLP 61
           C+IN  W     LRL +L +   NQ S  E++ EKR+P
Sbjct: 271 CMINETWPVDRALRLQFLIQQRNNQSSNEEQKQEKRVP 308


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 231  KLTTSDARPPSIGFDLIKALIPSL-VRV 311
            K  TS ARPP +GF   KAL+PS  +RV
Sbjct: 959  KFVTSVARPPILGF---KALMPSFCIRV 983


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 494 DDKIYPHEIRSKTLFSKLQ*PTPIFFINYLH 586
           D K+YP  I     F  L+   P+FF+ YLH
Sbjct: 214 DGKVYPQSIIRLEEFKNLKANEPVFFL-YLH 243


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 399 FAVSPSCRIRHEID-LQQYYDVNDVTF 476
           FA +PS R++  ++ L+ YY+  DVT+
Sbjct: 54  FAETPSVRVQRALEILRYYYEQEDVTY 80


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 554 PTPIFFINYLHTPNVREKSINILDQNEIVIS 646
           P PI F   +HT  + + ++N+   NE  +S
Sbjct: 532 PLPILFDQCVHTVKLEDNTVNLSFVNETTVS 562


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 503 IYPHEIRSKTLFSKLQ*PTPIFFINYLHTPNVREKSINILDQNE 634
           I P E+R   +FSKL       FI + +T  ++E  + +L  +E
Sbjct: 169 IRPSEVRYANIFSKLSFSWISSFIKFGYTNYLKESDVWLLPPDE 212


>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = -1

Query: 673 NQAIQNVLL*NHDFVLI*DINRFFTNVRSM*VIDEKDRSGLLKFAKQSFGTN 518
           NQ + N+   N   + I D++ ++  +++  ++DE    GL  ++K+S G N
Sbjct: 35  NQNLYNIETENVKDLNIEDVD-YYEKLQNFKIVDENIDPGLRTYSKRSVGVN 85


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 52  PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 150
           P MW      P  N+ +   YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,667,044
Number of Sequences: 5004
Number of extensions: 74642
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)