Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0227.Seq
         (928 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    29   3.6  
AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    29   6.2  
Z50016-14|CAI06050.2|  177|Caenorhabditis elegans Hypothetical p...    28   8.2  

>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +3

Query: 45  LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI-ES**GRHLKDASPVLDHAICKSYP 221
           +P+  V+  ++ PS +S     + VTT  V+ TTI  S         + V   A   + P
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTITTSTPPSTTSPTTTVTPVATSSATP 618

Query: 222 DSSKLTTSDARPPSIGFDLI 281
             SK TT+  RP +   +L+
Sbjct: 619 KPSKRTTT-RRPMTASKELV 637


>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 442 KSISCRIRHEGDTANGSIYQFWFLRSXSVXWITVVILELIHAIRTL 305
           K+ S  I  + D+  G++   WF ++ SV WI +V+   I   +T+
Sbjct: 213 KTNSVEIDAQYDSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258


>Z50016-14|CAI06050.2|  177|Caenorhabditis elegans Hypothetical
           protein T21C12.8 protein.
          Length = 177

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 430 CRIRHEGDTANGSIYQFWFLRSXSVXWITVVILELIHAIRTLT 302
           CR+ H G+T NG  Y  +F       +IT  +  +     +LT
Sbjct: 124 CRLNHRGETQNGKRY-VYFYSVGKTFFITFFVFSMFLLFASLT 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,152,679
Number of Sequences: 27780
Number of extensions: 413188
Number of successful extensions: 1029
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)