Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0226.Seq
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    29   0.70 
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   4.9  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    26   4.9  

>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
 Frame = -3

Query: 653 LQIAWSIPATHLSNVCPYXLSMXVSATTMVVTCNGESGFDSGE----GA*ETVPHPRKAA 486
           LQ+A S+    LS  C    S    + ++ V C G+S    GE    G+ E +P  R   
Sbjct: 193 LQVAASLLLPALSGSCALLTSYSAKSKSLQVACTGDSRAVLGECTPDGSWEAIPLSRDQT 252

Query: 485 G------AQITHSRHGEVVTKNN 435
           G      +++     GE V +NN
Sbjct: 253 GMNPDEASRLEVEHPGEEVLRNN 275


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +1

Query: 397 LIPITRPRKSPVSLFFVTTSPCREWVICAPAAFL 498
           +IPI +  KS +SL F+T SPC  + IC+  A L
Sbjct: 45  IIPIAQ--KSNISLPFLTLSPC-SFTICSLRARL 75


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 468 VGNLRACCLPWMWYRFSGSL 527
           + N+R   +PW  Y+ SGSL
Sbjct: 28  INNVRCVAIPWQGYQRSGSL 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,767
Number of Sequences: 5004
Number of extensions: 58042
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)