Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0226.Seq
         (742 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375160-1|AAQ64003.1| 1843|Homo sapiens cardiomyopathy associat...    32   1.9  
AL713648-1|CAD28459.1| 1059|Homo sapiens hypothetical protein pr...    32   1.9  
AK126299-1|BAC86519.1| 1358|Homo sapiens protein ( Homo sapiens ...    32   1.9  
AJ626900-1|CAF25192.1| 1843|Homo sapiens Xin A protein.                32   1.9  
BC031094-1|AAH31094.1|  633|Homo sapiens zinc finger, SWIM-type ...    31   4.3  
AC103914-1|AAX82016.1|  538|Homo sapiens unknown protein.              31   4.3  

>AY375160-1|AAQ64003.1| 1843|Homo sapiens cardiomyopathy associated
            protein 1 protein.
          Length = 1843

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = -3

Query: 671  DESG*LLQIAWSIPATHLSNVCPYXLSMXVSATTMVVTCNGESGFDSGEGA*ETVPHPRK 492
            +E G   Q+AW  P   ++ VCP  L    + TT+     G     SG  A    PHP  
Sbjct: 1194 EEPGGCTQMAWGPPGKAMAEVCPGGLQ--AAETTLKTAPLGRHILASGPQAAGASPHPHN 1251

Query: 491  A 489
            A
Sbjct: 1252 A 1252


>AL713648-1|CAD28459.1| 1059|Homo sapiens hypothetical protein
           protein.
          Length = 1059

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = -3

Query: 671 DESG*LLQIAWSIPATHLSNVCPYXLSMXVSATTMVVTCNGESGFDSGEGA*ETVPHPRK 492
           +E G   Q+AW  P   ++ VCP  L    + TT+     G     SG  A    PHP  
Sbjct: 630 EEPGGCTQMAWGPPGKAMAEVCPGGLQ--AAETTLKTAPLGRHILASGPQAAGASPHPHN 687

Query: 491 A 489
           A
Sbjct: 688 A 688


>AK126299-1|BAC86519.1| 1358|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44319 fis, clone TRACH3000926, moderately
           similar to Mus musculus cardiac morphogenesis (Xin). ).
          Length = 1358

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = -3

Query: 671 DESG*LLQIAWSIPATHLSNVCPYXLSMXVSATTMVVTCNGESGFDSGEGA*ETVPHPRK 492
           +E G   Q+AW  P   ++ VCP  L    + TT+     G     SG  A    PHP  
Sbjct: 709 EEPGGCTQMAWGPPGKAMAEVCPGGLQ--AAETTLKTAPLGRHILASGPQAAGASPHPHN 766

Query: 491 A 489
           A
Sbjct: 767 A 767


>AJ626900-1|CAF25192.1| 1843|Homo sapiens Xin A protein.
          Length = 1843

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = -3

Query: 671  DESG*LLQIAWSIPATHLSNVCPYXLSMXVSATTMVVTCNGESGFDSGEGA*ETVPHPRK 492
            +E G   Q+AW  P   ++ VCP  L    + TT+     G     SG  A    PHP  
Sbjct: 1194 EEPGGCTQMAWGPPGKAMAEVCPGGLQ--AAETTLKTAPLGRHILASGPQAAGASPHPHN 1251

Query: 491  A 489
            A
Sbjct: 1252 A 1252


>BC031094-1|AAH31094.1|  633|Homo sapiens zinc finger, SWIM-type
           containing 2 protein.
          Length = 633

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 193 FRTPAHRRYAPQTCQYHRGCVTDSAAHKCN 282
           F    H R  P T ++HR C+ +   HKCN
Sbjct: 351 FHLGQHTRLLPCTHKFHRKCIDNWLFHKCN 380


>AC103914-1|AAX82016.1|  538|Homo sapiens unknown protein.
          Length = 538

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 193 FRTPAHRRYAPQTCQYHRGCVTDSAAHKCN 282
           F    H R  P T ++HR C+ +   HKCN
Sbjct: 256 FHLGQHTRLLPCTHKFHRKCIDNWLFHKCN 285


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,403,520
Number of Sequences: 237096
Number of extensions: 2210073
Number of successful extensions: 4061
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4059
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8847149012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)