Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0226.Seq
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   4.0  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   5.3  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   5.3  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   5.3  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   5.3  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   5.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.3  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 223 PQTCQYHRGCVTDSAAHKCNYELFNRNNFSI 315
           P T   H  C+T   + + N +    NNFS+
Sbjct: 290 PLTTIQHNNCLTRIPSTRINKQHTRGNNFSL 320


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 253 VTDSAAHKCNYELFNRNNFSIRYWSWNY 336
           +  S ++  NY  +N NN+    ++ NY
Sbjct: 81  IISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 253 VTDSAAHKCNYELFNRNNFSIRYWSWNY 336
           +  S ++  NY  +N NN+    ++ NY
Sbjct: 81  IISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 253 VTDSAAHKCNYELFNRNNFSIRYWSWNY 336
           +  S ++  NY  +N NN+    ++ NY
Sbjct: 81  IISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 253 VTDSAAHKCNYELFNRNNFSIRYWSWNY 336
           +  S ++  NY  +N NN+    ++ NY
Sbjct: 81  IISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 253 VTDSAAHKCNYELFNRNNFSIRYWSWNY 336
           +  S ++  NY  +N NN+    ++ NY
Sbjct: 81  IISSLSNNYNYSNYNNNNYKQLCYNINY 108


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 481  APAAFLGCGTVSQAPSPESNPDSP 552
            AP A+  CGTVS     +  P SP
Sbjct: 1268 APPAY-SCGTVSVPQQQQLPPSSP 1290


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 501  SKEGSRRANYPLPARGGSDEK*RYG 427
            +K  S+ AN P PA GG   + + G
Sbjct: 1014 AKPQSQEANKPKPATGGKGTRPKRG 1038


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,664
Number of Sequences: 438
Number of extensions: 4563
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)