Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0226.Seq
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    35   0.065
At5g22540.1 68418.m02630 expressed protein contains Pfam profile...    28   5.7  
At2g03420.1 68415.m00300 expressed protein                             28   5.7  
At5g49130.1 68418.m06081 MATE efflux family protein contains Pfa...    27   9.9  

>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 403 PITRPRKSPVSLFFVTTSPCREWVICAPAAFLGCGTVSQAPSPESNPDSPLXVT 564
           PI+ P KSP +    TTSP +   + +P         + A SP  +P SP  V+
Sbjct: 24  PISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77


>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 440

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -3

Query: 686 EVVNLDESG*LLQIAWSIPATH-----LSNVCPYXLSMXVSATTMVVTCNG 549
           E  NLD+   + ++ W +P+       L N  PY L   +  T+ +VTC+G
Sbjct: 142 EYTNLDDP--IFRMPWILPSIRADLLLLENQVPYVLLQTLFETSKLVTCSG 190


>At2g03420.1 68415.m00300 expressed protein
          Length = 170

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -3

Query: 653 LQIAWSIPATHLSNVCPYXLSMXVSATTMVVTCNGESGFDSGEGA*ETVPHP 498
           + ++ S P+     +C     +  S T ++  C  E+G  SG    E+VP P
Sbjct: 29  MALSSSAPSPFHHLLCKSTFPLAASLTLLLSPCTAEAGLMSGSPGIESVPGP 80


>At5g49130.1 68418.m06081 MATE efflux family protein contains Pfam
           profile PF01554: MatE Uncharacterized membrane protein
           family
          Length = 502

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 483 ACCLPWMWYRFSGSLSGIEP 542
           A CL W WY F   L+G  P
Sbjct: 275 AVCLEWWWYEFMTVLAGYLP 294


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,549,453
Number of Sequences: 28952
Number of extensions: 317971
Number of successful extensions: 693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)