Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0222.Seq
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   2.6  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    25   4.6  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    24   8.0  

>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 204 NWXHSYCDVRGEILGSSQDEXQRKHLPKVFSSIKNE 97
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
 Frame = -2

Query: 161 DRRKTNXSESICQRCFHQSRTKXRGSKA--IRY 69
           +  + N    IC  CFH +     G KA  +RY
Sbjct: 190 ENSENNREALICSHCFHHNGLASYGEKASDVRY 222


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 21  NVGGSLDDIFTVRTRAVSNRLRTSXFRS*LMKTPLANAFA 140
           N+GG L D+F  R R  +  +    +R  L    LAN  A
Sbjct: 305 NMGGYLMDLFIERERVQAMIMMCKAYRPSLTMEFLANTLA 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,274,150
Number of Sequences: 5004
Number of extensions: 20147
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)