Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0222.Seq
         (357 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   1.9  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   1.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.8  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 169 NSWIVARRTSAKAFAKGVFINQERXLEVRRRLDTALVLTVN 47
           N  +VAR   A  F   V IN+     +  R+   L+ T+N
Sbjct: 351 NQAVVARHDEAMIFPADVKINRGLXWIISDRMPVFLLXTLN 391


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 182 TLEVKFLDRRKTNXSESICQRCFHQSRTK--XRGSKAIRYRPSS 57
           +L+  F D+ + + +  +C+ C  + RTK      K++++R SS
Sbjct: 20  SLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQHRGSS 63


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 158  RRKTNXSESICQRCFHQ 108
            RR+ N +E++C   F Q
Sbjct: 966  RRRLNVNETVCSDYFSQ 982


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,000
Number of Sequences: 438
Number of extensions: 1392
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)