Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0221.Seq
         (907 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.2  
03_05_0941 + 29008322-29009686,29009929-29010012,29010889-290110...    28   8.9  
01_07_0351 + 42952504-42952692,42952824-42952910,42953039-429532...    28   8.9  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 655 ITIHWPSFYNVV-TGKTLALPNLIALQH 735
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>03_05_0941 +
           29008322-29009686,29009929-29010012,29010889-29011052,
           29011208-29011233,29011494-29011583,29012135-29012229,
           29012328-29012495
          Length = 663

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 10/23 (43%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = +1

Query: 682 NVVTGKTLALPNLIALQHI-PLF 747
           N +TG+ +ALP++I ++H+ P+F
Sbjct: 171 NPITGEQIALPSVITIEHVNPIF 193


>01_07_0351 +
           42952504-42952692,42952824-42952910,42953039-42953257,
           42953329-42953502,42954799-42954852,42954983-42955123,
           42955599-42955637,42956689-42957045
          Length = 419

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 127 PQYSYGYDVQDTLTGDFKGHQENRNGDLVTGSY 225
           PQY Y Y V   L GD + HQ  R  DL  G++
Sbjct: 278 PQYEYDYLVWKVLAGDRRHHQ--RPKDLAGGNW 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,179,914
Number of Sequences: 37544
Number of extensions: 327177
Number of successful extensions: 731
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)