Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0220.Seq
(903 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 100 3e-22
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 61 2e-10
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 49 1e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 41 3e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 39 8e-04
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 37 0.003
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 36 0.008
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 36 0.008
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 35 0.014
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 35 0.014
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 33 0.042
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 33 0.042
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 33 0.056
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 32 0.097
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 31 0.22
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 31 0.30
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 30 0.39
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 30 0.39
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 30 0.39
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 30 0.52
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 3.6
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 27 3.6
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 3.6
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 4.8
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 26 6.4
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 8.4
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 26 8.4
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me... 26 8.4
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 26 8.4
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 100 bits (239), Expect = 3e-22
Identities = 58/158 (36%), Positives = 79/158 (50%), Gaps = 2/158 (1%)
Frame = +1
Query: 259 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 438
+L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 439 KTMGYKEPTPIQAQGWPIAMSGKI*LAYPKRVPAKRWPTSCQPLCT*TTNRLF--GEVMV 612
K +G++ PTPIQ Q WP+AMSG+ + K + L G+ +
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPI 197
Query: 613 RLLWSWAAXQRVSTTNFSKLLQILGHTSYVRNTCVFGG 726
L+ A R + G +S +RNTCV+GG
Sbjct: 198 VLV---LAPTRELAVQIQQECTKFGKSSRIRNTCVYGG 232
Score = 66.9 bits (156), Expect = 4e-12
Identities = 41/93 (44%), Positives = 52/93 (55%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGGLXES*HNKFQQVAADF 683
+D+VG+ TGSGKTL+Y LPAIVHIN QP + GDGPI LVL E + QQ F
Sbjct: 160 RDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTREL-AVQIQQECTKF 218
Query: 684 GXHILCS*HVCVWWWFLKESKPGTLRRGXKIVI 782
G + CV+ + + L RG +I I
Sbjct: 219 GKSSRIR-NTCVYGGVPRGPQIRDLIRGVEICI 250
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 60.9 bits (141), Expect = 2e-10
Identities = 33/94 (35%), Positives = 55/94 (58%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGGLXES*HNKFQQVAADF 683
+D++GV KTGSGKT+A++LP HI +Q P++ G+GPIA+++ E F++ F
Sbjct: 456 RDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRE-CKPF 514
Query: 684 GXHILCS*HVCVWWWFLKESKPGTLRRGXKIVIC 785
+L C + + + L+RG +IV+C
Sbjct: 515 -LKLLNIRACCAYGGAPIKDQIADLKRGAEIVVC 547
Score = 48.0 bits (109), Expect = 2e-06
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 432
++ + F K+FY + SP EV+E R + + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 433 GVKTMGYKEPTPIQAQGWPIAMSGK 507
+ ++GY++PT IQAQ P SG+
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGR 456
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 48.8 bits (111), Expect = 1e-06
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLGGLXE 644
KDL+G+ +TGSGKT A+I+P I+ I+ PP+ + GP A+VL E
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRE 336
Score = 42.3 bits (95), Expect = 9e-05
Identities = 16/56 (28%), Positives = 34/56 (60%)
Frame = +1
Query: 340 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRK 287
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 40.7 bits (91), Expect = 3e-04
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
PI F+E + +++G+K YKEPTPIQA WP ++G+
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGR 203
Score = 36.3 bits (80), Expect = 0.006
Identities = 13/26 (50%), Positives = 23/26 (88%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHIN 581
+D+VG+ +TGSGKT+A+ +PA+ ++N
Sbjct: 203 RDVVGIAETGSGKTVAFGIPALQYLN 228
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 39.1 bits (87), Expect = 8e-04
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG+
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGR 207
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAI 569
+DL+ +TGSGKT ++ P +
Sbjct: 207 RDLMACAQTGSGKTAGFLFPIL 228
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 37.1 bits (82), Expect = 0.003
Identities = 13/27 (48%), Positives = 22/27 (81%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINN 584
+D+VG+ +TGSGKT A+++P I H+ +
Sbjct: 107 RDVVGMARTGSGKTAAFVIPMIEHLKS 133
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
F+ + + + G+K PTPIQ + P+ + G+
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGR 107
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 35.9 bits (79), Expect = 0.008
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQP 590
+D++G+ +TGSGKT A+ LP I + N P
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNP 112
Score = 29.9 bits (64), Expect = 0.52
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 501
F+E D + + + +G+K PTPIQ + P+ ++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLN 82
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 35.9 bits (79), Expect = 0.008
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHI 578
+D++G KTGSGKTLA+I+P I ++
Sbjct: 77 RDILGAAKTGSGKTLAFIVPLIENL 101
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 35.1 bits (77), Expect = 0.014
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVL---GGLXES*HNKFQQV 671
KDLV +TGSGKT AY++P + + Q I G AL+L L + +N +++
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKL 111
Query: 672 AADFGXHI 695
A HI
Sbjct: 112 TAFCSKHI 119
Score = 29.9 bits (64), Expect = 0.52
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +1
Query: 367 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGK 52
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 35.1 bits (77), Expect = 0.014
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAI 569
+D++G KTGSGKTLA+++P I
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTI 148
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 33.5 bits (73), Expect = 0.042
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQP 590
KD+VG TGSGKT A+I+P + + +P
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLLYRP 325
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 33.5 bits (73), Expect = 0.042
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPI 617
KDLV TGSGKTLAY+LP + + G G +
Sbjct: 39 KDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGAL 76
Score = 30.7 bits (66), Expect = 0.30
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
F+ N +++ V G+K+ TP+QA P+ + K
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNK 39
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 33.1 bits (72), Expect = 0.056
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYPKRVPAK 543
FE+ + G+ G++ P+PIQ + PIA+SG+ LA K K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/47 (21%), Positives = 25/47 (53%)
Frame = +3
Query: 447 GLQRTDAHSSSRLADSYVWKDLVGVPKTGSGKTLAYILPAIVHINNQ 587
G +R + + +D++ K G+GKT A+++P++ ++ +
Sbjct: 63 GFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTK 109
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 32.3 bits (70), Expect = 0.097
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +1
Query: 331 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 480
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 31.1 bits (67), Expect = 0.22
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 507 DLVGVPKTGSGKTLAYILPAIVH 575
D++G TGSGKTLA+ +P + H
Sbjct: 161 DIIGKADTGSGKTLAFGIPILEH 183
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 30.7 bits (66), Expect = 0.30
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQP 590
KD +TGSGKTLAY+LP + + P
Sbjct: 179 KDAFIEAQTGSGKTLAYLLPIVQRLIRLP 207
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 30.3 bits (65), Expect = 0.39
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPP 593
+DL+ TGSGKT+AY+ P + + P
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVP 113
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 30.3 bits (65), Expect = 0.39
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 507 DLVGVPKTGSGKTLAYILPAIVHINNQPP 593
+L+ V TG GK+L++++PA++ Q P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 30.3 bits (65), Expect = 0.39
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 507 DLVGVPKTGSGKTLAYILPAIVHINNQPP 593
+L+ V TG GK+L++++PA++ Q P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 29.9 bits (64), Expect = 0.52
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQP 590
++ +G KTGSGKT A+ LP I + P
Sbjct: 45 RNCIGGAKTGSGKTAAFALPIIEKWSKDP 73
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 27.1 bits (57), Expect = 3.6
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3
Query: 528 TGSGKTLAYILPAI 569
TGSGKTL+Y++P +
Sbjct: 182 TGSGKTLSYVIPIV 195
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Frame = +1
Query: 226 SEHASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEY------RNNHEVTVSGVEVHNP 387
++ A R+G + +Q F + F+D P + + + NH+ V+ V+ P
Sbjct: 255 TKSAVMRIGLLEMQKFGRMFFDCKPLTMSEESCGIADLITTCLGGRNHKCAVAFVKTGKP 314
Query: 388 IQYFEEANFPDYVQQGVKT 444
+ E+ QG T
Sbjct: 315 MHVVEQELLDGQKLQGAAT 333
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIV 572
KD+ + TG GK+L Y LPA++
Sbjct: 535 KDVFILMPTGGGKSLCYQLPAVI 557
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 26.6 bits (56), Expect = 4.8
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Frame = -3
Query: 238 THVLTSREFF--FPTKSSRSSKS-------IATV--AKSRRIIAEFVASSKFGTTVSTAI 92
T +S EFF +P SS SS S +A+ A S + + + ASS+ T+ S+ +
Sbjct: 138 TSATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASSTEVTSSYPASSEVATSTSSYV 197
Query: 91 IPVT 80
PV+
Sbjct: 198 APVS 201
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/35 (22%), Positives = 21/35 (60%)
Frame = +3
Query: 156 DLATVAIDLEDLEDLVGKKNSLEVRTCVAQIGICF 260
D++ + + + + +NS+++ +C+ Q+G CF
Sbjct: 276 DISLIMALISAIINKTASQNSIKIISCLYQVGFCF 310
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.8 bits (54), Expect = 8.4
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 253 IPIWATHVLTSREFFFP-TKSSRSSKSIATVAKSRRIIAEFVASSKFGT 110
I + +T + T+R + TKSS SSK +K+ R + A K GT
Sbjct: 1109 ISLASTSLSTNRSLYTQYTKSSNSSKMTRNTSKNNRRLERKRARGKKGT 1157
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = -2
Query: 185 LQIYCHRCQIE----KNYRRICCLLQIWNHRFHGYYSSYQT*LFFGFS*RCLFKLWI 27
+ +Y Q+E +NY I C L +WN Y +F + +++W+
Sbjct: 164 IHVYRRYIQVEPRAIENYIEILCKLGLWNEAARQYEDILNRPVFLSAKRKSNYQIWL 220
>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 8.4
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Frame = -1
Query: 555 CRPTFCRNPFWVRQLNLSRHSYRPALSL----NGRRFFVTHCLYTLLHIIRKICFFKVLN 388
C P + + + Q ++S Y P L+L G F+ Y + R F L+
Sbjct: 199 CNPPYISDDDFAAQTDISVRKYEPKLALLAKNGGNEFYYKFSQYIKRMLQRNAKDFVPLS 258
Query: 387 RIM-NLNATYSYLVIISVLFDFIW 319
I+ + +T+ ++ S+ D W
Sbjct: 259 LIVFEIGSTHQAKIVKSLFDDTNW 282
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 722 VVVPKREQARDFEKGXENSHLLLPGRLIG 808
V+ KR++ + F+KG PG+L+G
Sbjct: 219 VLAKKRKERKQFKKGFRPVTFSAPGKLVG 247
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,720,580
Number of Sequences: 5004
Number of extensions: 79701
Number of successful extensions: 246
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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