Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0220.Seq
(903 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 65 7e-11
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 63 2e-10
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 61 1e-09
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 59 4e-09
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 44 2e-04
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 43 3e-04
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 42 6e-04
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 42 6e-04
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 42 6e-04
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 42 8e-04
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 38 0.007
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 36 0.052
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 34 0.12
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 34 0.16
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 34 0.16
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 34 0.16
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 34 0.16
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 33 0.28
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 33 0.28
L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical pr... 32 0.65
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 31 0.85
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 31 0.85
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 31 0.85
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 31 1.1
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 31 1.1
U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical pr... 31 1.5
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 31 1.5
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 31 1.5
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 31 1.5
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 30 2.0
U93847-1|AAB58269.1| 760|Caenorhabditis elegans elongation fact... 30 2.0
U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation fact... 30 2.0
U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation fact... 30 2.0
U10414-6|AAN63384.1| 760|Caenorhabditis elegans Elongation fact... 30 2.0
AC091124-2|AAK27879.2| 1114|Caenorhabditis elegans Hypothetical ... 30 2.6
Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical pr... 29 6.0
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 29 6.0
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 29 6.0
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 29 6.0
AF025461-7|AAB70997.2| 330|Caenorhabditis elegans Seven tm rece... 28 7.9
AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine r... 28 7.9
AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine r... 28 7.9
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 64.9 bits (151), Expect = 7e-11
Identities = 38/93 (40%), Positives = 54/93 (58%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGGLXES*HNKFQQVAADF 683
+D++ + KTGSGKTLA++LPA+VHI Q +RG+GP LVL E + Q+V+ DF
Sbjct: 167 RDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEGPAVLVLLPTREL-AQQVQEVSIDF 225
Query: 684 GXHILCS*HVCVWWWFLKESKPGTLRRGXKIVI 782
H L C++ K + L RG IV+
Sbjct: 226 -CHSLGLKMTCLFGGASKGPQARDLERGVDIVV 257
Score = 64.1 bits (149), Expect = 1e-10
Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Frame = +1
Query: 259 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 438
+L P K+FY + V +R YE++++ + ++VT+ G V P+ F EA P + + +
Sbjct: 86 NLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAPLPGQIHE-L 144
Query: 439 KTMGYKEPTPIQAQGWPIAMSGKI*LAYPKRVPAKRWPTSCQPL--CT*TTNRLFGE--V 606
+++PT IQ+ WPIAMSG+ ++ K K L T +R GE
Sbjct: 145 LYGKFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEGPA 204
Query: 607 MVRLLWSWAAXQRVSTTNFSKLLQILGHTSYVRNTCVFGGGS 732
++ LL + Q+V + H+ ++ TC+FGG S
Sbjct: 205 VLVLLPTRELAQQVQEVSID-----FCHSLGLKMTCLFGGAS 241
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/94 (36%), Positives = 53/94 (56%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGGLXES*HNKFQQVAADF 683
+D++G+ KTGSGKTLA++LP HI +QP + GDGPIA++L E +++ A F
Sbjct: 342 RDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVILAPTRELAMQTYKE-ANKF 400
Query: 684 GXHILCS*HVCVWWWFLKESKPGTLRRGXKIVIC 785
+ C + + L+RG +IV+C
Sbjct: 401 AKPLGLK-VACTYGGVGISEQIADLKRGAEIVVC 433
Score = 48.8 bits (111), Expect = 5e-06
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 432
V + F KNFY + + + EV+ YR + +TV G++ PI+ + + +
Sbjct: 258 VYYRKFKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCGVNLKMMN 317
Query: 433 GVKTMGYKEPTPIQAQGWPIAMSGK 507
+K Y +PT IQAQ P MSG+
Sbjct: 318 VLKKFEYSKPTSIQAQAIPSIMSGR 342
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 60.9 bits (141), Expect = 1e-09
Identities = 23/42 (54%), Positives = 36/42 (85%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVL 629
+D++G+ KTGSGKT AY+ PAIVHI +QP ++ G+GP+A+++
Sbjct: 303 RDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLKAGEGPVAVIV 344
Score = 60.5 bits (140), Expect = 2e-09
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ Q FNKNFY+ H + + +V +N + V G++ P+ F +F + +
Sbjct: 220 IQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKLLMEA 279
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGKI*LAYPK----RVPAKRWP 552
++ Y++PTPIQA P A+SG+ L K + A WP
Sbjct: 280 IRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWP 322
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 59.3 bits (137), Expect = 4e-09
Identities = 25/57 (43%), Positives = 36/57 (63%)
Frame = +1
Query: 337 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
+R + +++ G V P++ +EEA FPD V Q VK +GY EPTPIQ Q PI + +
Sbjct: 283 FREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNR 339
Score = 44.4 bits (100), Expect = 1e-04
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGD----GPIALVLGGLXES*HNKFQQV 671
+D++GV +TGSGKT A++LP +V I + P + R + GP A+++ E + ++
Sbjct: 339 RDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTREL-AQQIEEE 397
Query: 672 AADFGXHILCS*HVCVWWWFLKESKPGTLRRGXKIVI 782
FG +L V V +E + LR G ++VI
Sbjct: 398 TNKFG-KLLGIKTVSVIGGASREDQGMKLRMGVEVVI 433
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/50 (40%), Positives = 31/50 (62%)
Frame = +3
Query: 438 KDNGLQRTDAHSSSRLADSYVWKDLVGVPKTGSGKTLAYILPAIVHINNQ 587
+ NG ++ S +D +GV +TGSGKTLA++LPA++HI+ Q
Sbjct: 100 RKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQ 149
Score = 39.1 bits (87), Expect = 0.004
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Frame = +1
Query: 253 FVSLQPFNKNFYDPHPTVLKRSPYEVEE-YRNNHEVTV------SGVEVHNPIQYFEEAN 411
F ++P ++ Y SP +++E Y N + V S V++ P+ FE+A
Sbjct: 30 FSWMKPIVRDLYKIPNEQKNLSPEQLQELYTNGGVMKVYPFREESTVKIPPPVNSFEQAF 89
Query: 412 FPDYVQQG-VKTMGYKEPTPIQAQGWPIAMSGK 507
+ G ++ G+++P+PIQ+Q WP+ +SG+
Sbjct: 90 GSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQ 122
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 43.2 bits (97), Expect = 3e-04
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
V +G +V PI F + + +++++ +KT GY PTP+Q P G+
Sbjct: 154 VEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGR 204
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPP 593
+DL+ +TGSGKT A+++P + I P
Sbjct: 204 RDLMSCAQTGSGKTAAFLVPLVNAILQDGP 233
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +1
Query: 346 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
N V VSG V I++F EA F V + V GY +PTP+Q P ++ +
Sbjct: 124 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANR 177
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHI 578
+DL+ +TGSGKT A++LP I HI
Sbjct: 177 RDLMSCAQTGSGKTAAFLLPIIQHI 201
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +1
Query: 346 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
N V VSG V I++F EA F V + V GY +PTP+Q P ++ +
Sbjct: 108 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANR 161
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHI 578
+DL+ +TGSGKT A++LP I HI
Sbjct: 161 RDLMSCAQTGSGKTAAFLLPIIQHI 185
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +1
Query: 346 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
N V VSG V I++F EA F V + V GY +PTP+Q P ++ +
Sbjct: 105 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANR 158
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHI 578
+DL+ +TGSGKT A++LP I HI
Sbjct: 158 RDLMSCAQTGSGKTAAFLLPIIQHI 182
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 41.5 bits (93), Expect = 8e-04
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVL 629
+D++G+ TGSGKT+ ++LP ++ Q P R +GP L++
Sbjct: 228 RDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLII 272
Score = 38.3 bits (85), Expect = 0.007
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV-KTMGYKEPTP 468
P + ++S + E R ++ G + PI F E FP + + + K G PT
Sbjct: 156 PPGHIRRQSQEDYEIQRKRLGISCEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTA 215
Query: 469 IQAQGWPIAMSGK 507
IQ QG P+A+SG+
Sbjct: 216 IQIQGIPVALSGR 228
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +3
Query: 438 KDNGLQRTDAHSSSRLADSYVWKDLVGVPKTGSGKTLAYILPAI 569
KDN + +A S D+VG KTGSGKTLA ++P +
Sbjct: 92 KDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVL 135
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 35.5 bits (78), Expect = 0.052
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAI 569
KD++ KTGSGKTLA++LPAI
Sbjct: 106 KDVLASAKTGSGKTLAFLLPAI 127
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
FE+ N + + GY +PTPIQ P+A++GK
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGK 186
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQP 590
KD+ TG+GKT A++LP + + +P
Sbjct: 186 KDICACAATGTGKTAAFVLPILERMIYRP 214
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +3
Query: 435 CKDNGLQRTDAHSSSRLADSYVWKDLVGVPKTGSGKTLAYILPAIVHINNQP 590
C+ G + + L + KD++G+ +TGSGKT A+ +P + + + P
Sbjct: 59 CQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHP 110
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
P + F EAN + +Q+ V GY + TPIQ P+ G
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQG 378
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 507 DLVGVPKTGSGKTLAYILPAIVHI 578
D++ +TGSGKT A++LP + +
Sbjct: 380 DIMACAQTGSGKTAAFLLPIMTRL 403
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
P + F EAN + +Q+ V GY + TPIQ P+ G
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQG 378
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 507 DLVGVPKTGSGKTLAYILPAIVHI 578
D++ +TGSGKT A++LP + +
Sbjct: 380 DIMACAQTGSGKTAAFLLPIMTRL 403
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
P + F EAN + +Q+ V GY + TPIQ P+ G
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQG 378
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 507 DLVGVPKTGSGKTLAYILPAIVHI 578
D++ +TGSGKT A++LP + +
Sbjct: 380 DIMACAQTGSGKTAAFLLPIMTRL 403
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 33.1 bits (72), Expect = 0.28
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 519
P + F +++ P +++ V+ GY TPIQ P+ GK LA
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILA 340
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILP 563
KD++ +TGSGKT A++LP
Sbjct: 336 KDILACAQTGSGKTAAFLLP 355
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 33.1 bits (72), Expect = 0.28
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 519
P + F +++ P +++ V+ GY TPIQ P+ GK LA
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILA 340
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILP 563
KD++ +TGSGKT A++LP
Sbjct: 336 KDILACAQTGSGKTAAFLLP 355
>L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical
protein ZK686.2 protein.
Length = 593
Score = 31.9 bits (69), Expect = 0.65
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQP 590
+D+ TGSGKT+ Y+LP + + ++P
Sbjct: 157 RDVAIAAPTGSGKTICYVLPVLAAVGSKP 185
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 31.5 bits (68), Expect = 0.85
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLGGLXE 644
K+++G +TGSGKT A+++P + + + G GP A+++ E
Sbjct: 127 KNIMGRARTGSGKTGAFLIPLVQKLIAESKTNDGSVGPSAVIIAPTKE 174
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 31.5 bits (68), Expect = 0.85
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAI 569
KD+V + +TGSGKT A+++P +
Sbjct: 62 KDVVAMSRTGSGKTAAFVIPML 83
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +1
Query: 379 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
H +++ V + ++ G+ +PTPIQ + P M GK
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGK 62
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 31.5 bits (68), Expect = 0.85
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAI 569
KD+V + +TGSGKT A+++P +
Sbjct: 62 KDVVAMSRTGSGKTAAFVIPML 83
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +1
Query: 379 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
H +++ V + ++ G+ +PTPIQ + P M GK
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGK 62
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 31.1 bits (67), Expect = 1.1
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 507 DLVGVPKTGSGKTLAYILPAIVHINNQP 590
D++G +TG+GKTLA+ +P + ++ P
Sbjct: 128 DILGCARTGTGKTLAFAIPILQKLSVDP 155
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 31.1 bits (67), Expect = 1.1
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 507 DLVGVPKTGSGKTLAYILPAIVHINNQP 590
D++G +TG+GKTLA+ +P + ++ P
Sbjct: 128 DILGCARTGTGKTLAFAIPILQKLSVDP 155
>U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical
protein F55F8.2b protein.
Length = 579
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHI 578
+D++G +TGSGKTLA+ +P + +
Sbjct: 27 QDVLGAAETGSGKTLAFGIPLVARL 51
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHI 578
+D++G +TGSGKTLA+ +P + +
Sbjct: 194 QDVLGAAETGSGKTLAFGIPLVARL 218
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 507 DLVGVPKTGSGKTLAYILPAIVHI 578
D+V TGSGKTLA+++P ++ +
Sbjct: 775 DVVACAHTGSGKTLAFLIPFVIKL 798
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 507 DLVGVPKTGSGKTLAYILPAIVHI 578
D+V TGSGKTLA+++P ++ +
Sbjct: 775 DVVACAHTGSGKTLAFLIPFVIKL 798
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 507 DLVGVPKTGSGKTLAYILPAIVHINN 584
D+V TGSGKTLA++LP + I N
Sbjct: 48 DVVVESPTGSGKTLAFVLPMMRMIQN 73
>U93847-1|AAB58269.1| 760|Caenorhabditis elegans elongation
factor-2 kinase EFK-1B isoform protein.
Length = 760
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/86 (23%), Positives = 37/86 (43%)
Frame = -3
Query: 271 KVGAKQIPIWATHVLTSREFFFPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAI 92
++G K ++ H + + P + + KSI + E S G T ++
Sbjct: 639 EMGDKGAMLYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEELDSDCGKTTFSSF 698
Query: 91 IPVTRHDYFSDLVEDVYLNYGFFLTQ 14
P+TRH+ + + E +Y G+ L Q
Sbjct: 699 APLTRHEILAKMAE-MYKEGGYGLNQ 723
>U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation
factor-2 kinase EFK-1A isoform protein.
Length = 768
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/86 (23%), Positives = 37/86 (43%)
Frame = -3
Query: 271 KVGAKQIPIWATHVLTSREFFFPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAI 92
++G K ++ H + + P + + KSI + E S G T ++
Sbjct: 647 EMGDKGAMLYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEELDSDCGKTTFSSF 706
Query: 91 IPVTRHDYFSDLVEDVYLNYGFFLTQ 14
P+TRH+ + + E +Y G+ L Q
Sbjct: 707 APLTRHEILAKMAE-MYKEGGYGLNQ 731
>U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation factor
kinase protein1, isoform a protein.
Length = 768
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/86 (23%), Positives = 37/86 (43%)
Frame = -3
Query: 271 KVGAKQIPIWATHVLTSREFFFPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAI 92
++G K ++ H + + P + + KSI + E S G T ++
Sbjct: 647 EMGDKGAMLYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEELDSDCGKTTFSSF 706
Query: 91 IPVTRHDYFSDLVEDVYLNYGFFLTQ 14
P+TRH+ + + E +Y G+ L Q
Sbjct: 707 APLTRHEILAKMAE-MYKEGGYGLNQ 731
>U10414-6|AAN63384.1| 760|Caenorhabditis elegans Elongation factor
kinase protein1, isoform b protein.
Length = 760
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/86 (23%), Positives = 37/86 (43%)
Frame = -3
Query: 271 KVGAKQIPIWATHVLTSREFFFPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAI 92
++G K ++ H + + P + + KSI + E S G T ++
Sbjct: 639 EMGDKGAMLYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEELDSDCGKTTFSSF 698
Query: 91 IPVTRHDYFSDLVEDVYLNYGFFLTQ 14
P+TRH+ + + E +Y G+ L Q
Sbjct: 699 APLTRHEILAKMAE-MYKEGGYGLNQ 723
>AC091124-2|AAK27879.2| 1114|Caenorhabditis elegans Hypothetical
protein Y47A7.1 protein.
Length = 1114
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 13 PASERIHSLNKHLQLNPKNNHVW 81
PAS ++H L++ LQLN N+ W
Sbjct: 773 PASHQLHCLSRALQLNKANDSAW 795
>Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical
protein E03A3.2 protein.
Length = 809
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +3
Query: 513 VGVPKTGSGKTLAYILPAIVH 575
V +P TG+GK+L Y LPA+VH
Sbjct: 199 VSLP-TGAGKSLCYQLPAVVH 218
>Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical
protein T20D3.5b protein.
Length = 312
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 154 RRIIAEFVASSKFGTTVSTAIIPV 83
+++I +FVA S G T+STA P+
Sbjct: 220 QQLIGDFVAGSLLGATISTAFFPL 243
>Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical
protein T20D3.5a protein.
Length = 221
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 154 RRIIAEFVASSKFGTTVSTAIIPV 83
+++I +FVA S G T+STA P+
Sbjct: 129 QQLIGDFVAGSLLGATISTAFFPL 152
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
F EAN + +++ V GY + TPIQ P+ G
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQG 589
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 507 DLVGVPKTGSGKTLAYILPAIVHINNQPPIR-RGDG 611
D++ +TGSGKT A++LP + + ++ + G+G
Sbjct: 591 DIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEG 626
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
F EAN + +++ V GY + TPIQ P+ G
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQG 589
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 507 DLVGVPKTGSGKTLAYILPAIVHINNQPPIR-RGDG 611
D++ +TGSGKT A++LP + + ++ + G+G
Sbjct: 591 DIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEG 626
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
F EAN + +++ V GY + TPIQ P+ G
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQG 589
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 507 DLVGVPKTGSGKTLAYILPAIVHINNQPPIR-RGDG 611
D++ +TGSGKT A++LP + + ++ + G+G
Sbjct: 591 DIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEG 626
>AF025461-7|AAB70997.2| 330|Caenorhabditis elegans Seven tm
receptor protein 148 protein.
Length = 330
Score = 28.3 bits (60), Expect = 7.9
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -1
Query: 591 AVGCLCAQWLARCRPT--FCRNPFWVRQLNLSRHSYRPALSLNGRRFFVTHCLYTLLHII 418
+V C+C +A C T FC + + + S H R L LN R+ F+T T+L +
Sbjct: 200 SVECVCI--IAVCFSTILFCASNIYFTMKSASGHMSRKTLELN-RQLFITLTFQTILPFV 256
>AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine
receptor, class z protein9 protein.
Length = 281
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = -1
Query: 501 RHSYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVIISVLFD 328
R +YR N + + + Y + +I + F + + ++NLN T +L I+++F+
Sbjct: 29 RKAYRFNSERNTATYPIVNSFYKKVALINALYFIESILIVVNLNVTNEWLNKIAIIFN 86
>AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine
receptor, class z protein8 protein.
Length = 281
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = -1
Query: 501 RHSYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVIISVLFD 328
R +YR N + + + Y + +I + F + + ++NLN T +L I+++F+
Sbjct: 29 RKAYRFNSERNTATYPIVNSFYKKVALINALYFIESILIVVNLNVTNEWLNKIAIIFN 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,680,067
Number of Sequences: 27780
Number of extensions: 456818
Number of successful extensions: 1333
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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