Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0220.Seq
         (903 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       53   4e-09
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   5.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   8.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 52.8 bits (121), Expect = 4e-09
 Identities = 24/55 (43%), Positives = 33/55 (60%)
 Frame = +1

Query: 343 NNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
           +N +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G+
Sbjct: 180 DNIQVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGR 234



 Score = 27.9 bits (59), Expect = 0.13
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 504 KDLVGVPKTGSGKTLAYILPAI 569
           +DL+   +TGSGKT A+ +P I
Sbjct: 234 RDLMACAQTGSGKTAAFAVPII 255


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 751 PGLLSFRNHHQTHTCYEH 698
           P L+  + HHQ HT + H
Sbjct: 161 PPLVESQMHHQMHTQHPH 178


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 903 PQYPNIRSTLHQEPKI 856
           PQYP+  S + Q+P I
Sbjct: 440 PQYPSTSSHILQQPSI 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,411
Number of Sequences: 438
Number of extensions: 5995
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)