Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0220.Seq
(903 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 100 2e-21
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 94 1e-19
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 94 1e-19
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 71 1e-12
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 70 2e-12
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 70 2e-12
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 70 2e-12
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 67 2e-11
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 66 2e-11
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 62 5e-10
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 54 1e-07
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 48 6e-06
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 45 6e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 43 2e-04
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 42 4e-04
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 42 4e-04
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 42 7e-04
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 41 0.001
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 40 0.002
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 39 0.005
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 38 0.012
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 37 0.016
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 37 0.021
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 37 0.021
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 37 0.021
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 37 0.021
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 36 0.037
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 36 0.049
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 36 0.049
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 35 0.064
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 34 0.11
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 34 0.11
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 34 0.15
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 33 0.20
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 32 0.45
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 32 0.45
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 32 0.60
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 32 0.60
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 32 0.60
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 32 0.60
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 32 0.60
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 32 0.60
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 31 0.79
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 31 0.79
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 31 0.79
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 31 0.79
At4g27850.1 68417.m03999 proline-rich family protein contains pr... 31 1.0
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 31 1.0
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 31 1.0
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 29 3.2
At5g43990.2 68418.m05382 SET domain-containing protein identical... 29 4.2
At5g43990.1 68418.m05383 SET domain-containing protein identical... 29 4.2
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 29 4.2
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 29 4.2
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 29 4.2
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 29 5.6
At4g27040.1 68417.m03888 expressed protein 29 5.6
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 29 5.6
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con... 29 5.6
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 29 5.6
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 29 5.6
At3g59750.1 68416.m06666 receptor lectin kinase, putative simila... 28 7.4
At2g25460.1 68415.m03049 expressed protein 28 7.4
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 100 bits (239), Expect = 2e-21
Identities = 46/91 (50%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = +1
Query: 238 SPR-LGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 414
SPR L L PF KNFY P V + EVEEYR E+TV G ++ P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 415 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
PDYV + VK G+ EPTPIQ+QGWP+AM G+
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGR 137
Score = 74.9 bits (176), Expect = 6e-14
Identities = 41/93 (44%), Positives = 57/93 (61%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGGLXES*HNKFQQVAADF 683
+DL+G+ +TGSGKTL+Y+LPAIVH+N QP + GDGPI LVL E + QQ A+ F
Sbjct: 137 RDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTREL-AVQIQQEASKF 195
Query: 684 GXHILCS*HVCVWWWFLKESKPGTLRRGXKIVI 782
G C++ K + L++G +IVI
Sbjct: 196 GSSSKIK-TTCIYGGVPKGPQVRDLQKGVEIVI 227
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 93.9 bits (223), Expect = 1e-19
Identities = 50/162 (30%), Positives = 84/162 (51%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 420
P+ F +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 421 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYPKRVPAKRWPTSCQPLCT*TTNRLFG 600
+ + + +G+ EPTPIQAQGWP+A+ G+ + + K L + G
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 601 EVMVRLLWSWAAXQRVSTTNFSKLLQILGHTSYVRNTCVFGG 726
+ ++ A + ++ + + G S VR+TC++GG
Sbjct: 235 QDDGPIVLILAPTRELA-VQIQEESRKFGLRSGVRSTCIYGG 275
Score = 68.5 bits (160), Expect = 6e-12
Identities = 38/93 (40%), Positives = 56/93 (60%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGGLXES*HNKFQQVAADF 683
+DL+G+ +TGSGKTLAY+LPA+VH++ QP + + DGPI L+L E + Q+ + F
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTREL-AVQIQEESRKF 261
Query: 684 GXHILCS*HVCVWWWFLKESKPGTLRRGXKIVI 782
G C++ K + LRRG +IVI
Sbjct: 262 GLRSGVR-STCIYGGAPKGPQIRDLRRGVEIVI 293
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 93.9 bits (223), Expect = 1e-19
Identities = 50/162 (30%), Positives = 84/162 (51%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 420
P+ F +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 421 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYPKRVPAKRWPTSCQPLCT*TTNRLFG 600
+ + + +G+ EPTPIQAQGWP+A+ G+ + + K L + G
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 601 EVMVRLLWSWAAXQRVSTTNFSKLLQILGHTSYVRNTCVFGG 726
+ ++ A + ++ + + G S VR+TC++GG
Sbjct: 235 QDDGPIVLILAPTRELA-VQIQEESRKFGLRSGVRSTCIYGG 275
Score = 68.5 bits (160), Expect = 6e-12
Identities = 38/93 (40%), Positives = 56/93 (60%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGGLXES*HNKFQQVAADF 683
+DL+G+ +TGSGKTLAY+LPA+VH++ QP + + DGPI L+L E + Q+ + F
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTREL-AVQIQEESRKF 261
Query: 684 GXHILCS*HVCVWWWFLKESKPGTLRRGXKIVI 782
G C++ K + LRRG +IVI
Sbjct: 262 GLRSGVR-STCIYGGAPKGPQIRDLRRGVEIVI 293
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 70.9 bits (166), Expect = 1e-12
Identities = 28/84 (33%), Positives = 47/84 (55%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F +
Sbjct: 183 IDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSA 242
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGK 507
+K Y++PT IQ Q PI +SG+
Sbjct: 243 IKKQAYEKPTAIQCQALPIVLSGR 266
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/53 (47%), Positives = 37/53 (69%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGGLXES*HNKF 662
+D++G+ KTGSGKT A++LP IVHI +QP ++R +GPI ++ E H F
Sbjct: 266 RDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIF 318
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 69.7 bits (163), Expect = 2e-12
Identities = 34/79 (43%), Positives = 44/79 (55%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGKI*LAYPK 528
QAQ WPIAM G+ +A K
Sbjct: 185 QAQSWPIAMQGRDIVAIAK 203
Score = 45.2 bits (102), Expect = 6e-05
Identities = 32/93 (34%), Positives = 45/93 (48%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGGLXES*HNKFQQVAADF 683
+D+V + KTGSGKTL Y++P +H+ R GP LVL E + Q+ A F
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTREL-ATQIQEEAVKF 253
Query: 684 GXHILCS*HVCVWWWFLKESKPGTLRRGXKIVI 782
G S C++ K + L RG IV+
Sbjct: 254 GRSSRIS-CTCLYGGAPKGPQLRDLERGADIVV 285
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 69.7 bits (163), Expect = 2e-12
Identities = 34/79 (43%), Positives = 44/79 (55%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGKI*LAYPK 528
QAQ WPIAM G+ +A K
Sbjct: 185 QAQSWPIAMQGRDIVAIAK 203
Score = 45.2 bits (102), Expect = 6e-05
Identities = 32/93 (34%), Positives = 45/93 (48%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGGLXES*HNKFQQVAADF 683
+D+V + KTGSGKTL Y++P +H+ R GP LVL E + Q+ A F
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTREL-ATQIQEEAVKF 253
Query: 684 GXHILCS*HVCVWWWFLKESKPGTLRRGXKIVI 782
G S C++ K + L RG IV+
Sbjct: 254 GRSSRIS-CTCLYGGAPKGPQLRDLERGADIVV 285
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 69.7 bits (163), Expect = 2e-12
Identities = 34/79 (43%), Positives = 44/79 (55%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGKI*LAYPK 528
QAQ WPIAM G+ +A K
Sbjct: 185 QAQSWPIAMQGRDIVAIAK 203
Score = 45.2 bits (102), Expect = 6e-05
Identities = 32/93 (34%), Positives = 45/93 (48%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGGLXES*HNKFQQVAADF 683
+D+V + KTGSGKTL Y++P +H+ R GP LVL E + Q+ A F
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTREL-ATQIQEEAVKF 253
Query: 684 GXHILCS*HVCVWWWFLKESKPGTLRRGXKIVI 782
G S C++ K + L RG IV+
Sbjct: 254 GRSSRIS-CTCLYGGAPKGPQLRDLERGADIVV 285
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 66.9 bits (156), Expect = 2e-11
Identities = 38/97 (39%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLG---GLXES*HNKFQQVA 674
+D +GV KTGSGKTL ++LP + HI +QPP+ GDGPI LV+ L + H+ ++ +
Sbjct: 567 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFS 626
Query: 675 ADFGXHILCS*HVCVWWWFLKESKPGTLRRGXKIVIC 785
G I C V V+ + L+RG +IV+C
Sbjct: 627 KPLG--IRC---VPVYGGSGVAQQISELKRGTEIVVC 658
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/84 (33%), Positives = 45/84 (53%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +PF KNFY + + + EV YR E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGK 507
+K + Y++P PIQ Q PI MSG+
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGR 567
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 66.5 bits (155), Expect = 2e-11
Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGGLXES*HNKFQQVAADF 683
+D +GV KTGSGKTL ++LP + HI +QPP+ GDGPI LV+ E QQ+ +D
Sbjct: 434 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRE----LVQQIYSDI 489
Query: 684 GXHILCS*HVC--VWWWFLKESKPGTLRRGXKIVIC 785
+C V+ + L+RG +IV+C
Sbjct: 490 RKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVC 525
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/84 (34%), Positives = 45/84 (53%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +PF KNFY + + + V YR E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGK 507
+K + Y++P PIQAQ PI MSG+
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGR 434
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 62.1 bits (144), Expect = 5e-10
Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Frame = +1
Query: 274 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 441
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 442 TMGYKEPTPIQAQGWPIAMSGKI*LAYPK 528
+ G+ PTPIQAQ WPIA+ + +A K
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAK 480
Score = 43.6 bits (98), Expect = 2e-04
Identities = 31/93 (33%), Positives = 46/93 (49%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGGLXES*HNKFQQVAADF 683
+D+V + KTGSGKTL Y++PA + + + R +GP L+L E + Q A F
Sbjct: 473 RDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTREL-ATQIQDEALRF 530
Query: 684 GXHILCS*HVCVWWWFLKESKPGTLRRGXKIVI 782
G S C++ K + L RG IV+
Sbjct: 531 GRSSRIS-CTCLYGGAPKGPQLKELERGADIVV 562
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/86 (31%), Positives = 46/86 (53%)
Frame = +1
Query: 250 GFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQ 429
G +P + ++ P V K S +++ R +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 430 QGVKTMGYKEPTPIQAQGWPIAMSGK 507
+ +K G PTPIQ QG P+ +SG+
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGR 135
Score = 46.4 bits (105), Expect = 3e-05
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +3
Query: 438 KDNGLQRTDAHSSSRLADSYVWKDLVGVPKTGSGKTLAYILPAIVHINNQP---PIRRGD 608
KD G+ L +D++G+ TGSGKTL ++LP I+ + PI G+
Sbjct: 113 KDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGE 172
Query: 609 GPIALVL 629
GPIALV+
Sbjct: 173 GPIALVI 179
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 48.4 bits (110), Expect = 6e-06
Identities = 23/74 (31%), Positives = 40/74 (54%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 465
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 466 PIQAQGWPIAMSGK 507
PIQ QG P+ ++G+
Sbjct: 171 PIQVQGLPVILAGR 184
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVL 629
+D++G+ TGSGKTL ++LP I+ + PI G+GPI L++
Sbjct: 184 RDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIV 228
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 45.2 bits (102), Expect = 6e-05
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLGGLXE 644
+D++G+ +TGSGKT A++LP + +I+ PP+ +GP A+V+ E
Sbjct: 351 RDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRE 400
Score = 37.9 bits (84), Expect = 0.009
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +1
Query: 337 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 498
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ +
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGL 348
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +1
Query: 340 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 42.3 bits (95), Expect = 4e-04
Identities = 31/93 (33%), Positives = 44/93 (47%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGGLXES*HNKFQQVAADF 683
+D+V + KTGSGKTL Y++P +H+ R GP LVL E + Q A F
Sbjct: 267 RDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSR-MGPTILVLSPTREL-ATQIQVEALKF 324
Query: 684 GXHILCS*HVCVWWWFLKESKPGTLRRGXKIVI 782
G S C++ K + + RG IV+
Sbjct: 325 GKSSKIS-CACLYGGAPKGPQLKEIERGVDIVV 356
Score = 35.1 bits (77), Expect = 0.064
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGKI*LAYPK 528
V + G+ P+PIQAQ WPIAM + +A K
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAK 274
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 331 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 420
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 42.3 bits (95), Expect = 4e-04
Identities = 16/25 (64%), Positives = 23/25 (92%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHI 578
+DL+G+ KTGSGKTLA+ +PAI+H+
Sbjct: 152 RDLIGIAKTGSGKTLAFGIPAIMHV 176
Score = 37.5 bits (83), Expect = 0.012
Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 5/141 (3%)
Frame = +1
Query: 325 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 498
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 499 SGKI*LAYPKRVPAKRWPTSCQPLC-T*TTNRLF--GEVMVRLLWSWAAXQRVSTTNFSK 669
G+ + K K + N+ G V + R S
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISD 209
Query: 670 LLQILGHTSYVRNTCVFGGGS 732
+L+ G +++ CV+GG S
Sbjct: 210 VLREAGEPCGLKSICVYGGSS 230
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 41.5 bits (93), Expect = 7e-04
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +1
Query: 358 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
TV GV H F E N + + +T+GYK+PTPIQA P+A++G+
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGR 205
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 40.7 bits (91), Expect = 0.001
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Frame = +3
Query: 432 RCKDNGLQRTDAHSSSRLADSYVWKDLVGVPKTGSGKTLAYILPAIVHINNQPPIRR--- 602
+ K NG++ +S DLVG +TG GKTLA++LP + + N P +
Sbjct: 110 KLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKM 169
Query: 603 --GDGPIALVLGGLXES*HNKFQQVAADFGXH--ILCS*HVCVWWWFLKESKPGTLRRGX 770
G P LVL E +QVAADF + L C++ + G L+RG
Sbjct: 170 GYGRSPSVLVLLPTRE----LAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGV 225
Query: 771 KIVI 782
IV+
Sbjct: 226 DIVV 229
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +3
Query: 438 KDNGLQRTDAHSSSRLADSYVWKDLVGVPKTGSGKTLAYILPAIVHINNQPPIRR 602
KD G + + L KD++ KTG+GKT+A++LPAI + PP R
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASR 452
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 38.7 bits (86), Expect = 0.005
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +1
Query: 316 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 489
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 490 IAMSGKI*LA 519
A++GK LA
Sbjct: 143 AALTGKSLLA 152
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAI---VHINNQPPIRRGDGPIALVLGGLXE 644
K L+ TGSGKT ++++P I +++ P + P+A+VL E
Sbjct: 148 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRE 197
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 37.5 bits (83), Expect = 0.012
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 510 LVGVPKTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVL 629
LV P TG+GKT+AY+ P I H+ + P + R G ALV+
Sbjct: 71 LVNAP-TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVI 110
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 445 MGYKEPTPIQAQGWPIAMSGK 507
MG++ PT +QAQ P+ +SG+
Sbjct: 48 MGFEAPTLVQAQAIPVILSGR 68
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 37.1 bits (82), Expect = 0.016
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRR 602
KD++ KTG+GKT+A++LP+I + PP R
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASR 150
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 36.7 bits (81), Expect = 0.021
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +3
Query: 438 KDNGLQRTDAHSSSRLADSYVWKDLVGVPKTGSGKTLAYILPAI 569
K+ G R + + + +D++G +TGSGKTLA+++PA+
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/81 (24%), Positives = 33/81 (40%)
Frame = +1
Query: 265 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 444
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 445 MGYKEPTPIQAQGWPIAMSGK 507
MG+ T IQA+ P M G+
Sbjct: 172 MGFARMTQIQAKAIPPLMMGE 192
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 36.7 bits (81), Expect = 0.021
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 438 KDNGLQRTDAHSSSRLADSYVWKDLVGVPKTGSGKTLAYILPAIVHINNQPP 593
KD G + + L KD++ KTG+GKT+A++LP+I + PP
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPP 121
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 36.7 bits (81), Expect = 0.021
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +3
Query: 438 KDNGLQRTDAHSSSRLADSYVWKDLVGVPKTGSGKTLAYILPAI 569
K+ G Q + + KD++G +TGSGKTLA+++PA+
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAV 148
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 36.7 bits (81), Expect = 0.021
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 438
+ PF + +P P ++ + + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 439 KTMGYKEPTPIQAQGWPIAMSGK 507
+ Y +PTP+Q PI + G+
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGR 197
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLGGLXE 644
+DL+ +TGSGKT A+ P I I ++R G P+A++L E
Sbjct: 197 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRE 248
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 35.9 bits (79), Expect = 0.037
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
FE N V +K GYK PTPIQ + P+ +SG
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSG 65
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 507 DLVGVPKTGSGKTLAYILPAIVHINNQPP 593
D+V + +TGSGKT A+++P + + P
Sbjct: 67 DVVAMARTGSGKTAAFLIPMLEKLKQHVP 95
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 35.5 bits (78), Expect = 0.049
Identities = 14/43 (32%), Positives = 29/43 (67%)
Frame = +3
Query: 459 TDAHSSSRLADSYVWKDLVGVPKTGSGKTLAYILPAIVHINNQ 587
TD S++ + + +D++G +TGSGKTLA+++P + ++ +
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE 136
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 35.5 bits (78), Expect = 0.049
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +3
Query: 435 CKDNGLQRTDAHSSSRLADSYVWKDLVGVPKTGSGKTLAYILPAIVHINNQP 590
CK+ G+++ + + +D++G+ +TGSGKT A+ LP + + P
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDP 124
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 35.1 bits (77), Expect = 0.064
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAI 569
KD+V KTGSGKTLAY+LP +
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLL 105
Score = 32.3 bits (70), Expect = 0.45
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +1
Query: 325 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 505 K 507
K
Sbjct: 84 K 84
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVH-INNQPPIRRGDGPIALVLGGLXE 644
+D++G +TG+GKTLA+ +P I I RG P+ LVL E
Sbjct: 142 RDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRE 189
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 34.3 bits (75), Expect = 0.11
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +3
Query: 492 SYVWKDLVGVPKTGSGKTLAYILPAI 569
+Y KD++G +TGSGKTLA+ LP +
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPIL 250
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 33.9 bits (74), Expect = 0.15
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 438 KDNGLQRTDAHSSSRLADSYVWKDLVGVPKTGSGKTLAYILPAIVH-INNQPPIRRGDGP 614
K G+++ + L + +D++G +TG+GKTLA+ +P I I RG P
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNP 191
Query: 615 IALVLGGLXE 644
LVL E
Sbjct: 192 QCLVLAPTRE 201
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 33.5 bits (73), Expect = 0.20
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +1
Query: 268 PF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 444
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 445 MGYKEPTPIQAQGWPIAMSGK 507
Y +PTP+Q PI +G+
Sbjct: 164 CKYVKPTPVQRNAIPILAAGR 184
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLGGLXE 644
+DL+ +TGSGKT A+ P I I I R G P+A++L E
Sbjct: 184 RDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRE 235
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 32.3 bits (70), Expect = 0.45
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 501
V SG +V P+ F + + D + ++ Y PTP+Q PI ++
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLA 187
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIAL 623
+DL+ +TGSGKT A+ P I I + R G A+
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAV 228
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 32.3 bits (70), Expect = 0.45
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 501
V SG +V P+ F + + D + ++ Y PTP+Q PI ++
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLA 187
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIAL 623
+DL+ +TGSGKT A+ P I I + R G A+
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAV 228
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 31.9 bits (69), Expect = 0.60
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYPKRVPAK 543
FE+ + G+ G++ P+PIQ + PIA++G+ LA K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 31.9 bits (69), Expect = 0.60
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYPKRVPAK 543
FE+ + G+ G++ P+PIQ + PIA++G+ LA K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 31.9 bits (69), Expect = 0.60
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHI---NNQPP 593
KD+V TGSGKTLA++LP I I N+ PP
Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 86
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 31.9 bits (69), Expect = 0.60
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHI---NNQPP 593
KD+V TGSGKTLA++LP I I N+ PP
Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 87
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 31.9 bits (69), Expect = 0.60
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 438 KDNGLQRTDAHSSSRLADSYVWKDLVGVPKTGSGKTLAYILPAIVHINN 584
+D+G R + + KD++ +TGSGKT Y+ P I + N
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTN 144
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 31.9 bits (69), Expect = 0.60
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYPKRVPAKRWPTSCQ 564
PI+ F++ D V +GV GYK+P+ IQ + + G+ +A + K +
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 565 PLCT*TTNRLFGEVMVRLLWSWAAXQRVSTTNFSKLLQILG-HTSYVRNTCVFG 723
+C N +V V +L + R + K +Q +G HT+ + C+ G
Sbjct: 80 -VCQ-IVNISSRKVQVLVL----SPSRELASQTEKTIQAIGAHTNIQAHACIGG 127
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 31.5 bits (68), Expect = 0.79
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 373 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGK 47
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 435 CKDNGLQRTDAHSSSRLADSYVWKDLVGVPKTGSGKTLAYILPAI 569
C+ G + + L + KD++G+ +TGSGKT A+ +P +
Sbjct: 24 CERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPIL 68
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 31.5 bits (68), Expect = 0.79
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYPKRVPAK 543
FE+ + +G+ G+++P+PIQ + PIA++G LA K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 31.5 bits (68), Expect = 0.79
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYPKRVPAK 543
FE+ + +G+ G+++P+PIQ + PIA++G LA K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 31.5 bits (68), Expect = 0.79
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYPKRVPAK 543
FE+ + +G+ G+++P+PIQ + PIA++G LA K K
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At4g27850.1 68417.m03999 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 577
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -1
Query: 621 KQSDHHLSE*AVGCLCAQWLARCR-PTFCRNPFWVRQLNL 505
K + HL L W+ +C FC NP W+R NL
Sbjct: 390 KMTKTHLGAKKPSRLILSWITKCHFQMFCGNPMWIRPGNL 429
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 444 NGLQRTDAHSSSRLADSYVWKDLVGVPKTGSGKTLAYILPAI 569
+G+ + + L++ KD + KTG+GK++A++LPAI
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 444 NGLQRTDAHSSSRLADSYVWKDLVGVPKTGSGKTLAYILPAI 569
+G+ + + L++ KD + KTG+GK++A++LPAI
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 387
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQ 587
+D++ KTG+GKTLA+ +P I + +
Sbjct: 140 RDIIARAKTGTGKTLAFGIPIIKRLTEE 167
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 235 ASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 414
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 146 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 202
Query: 415 PDYVQQGVKTM 447
PD V +G +M
Sbjct: 203 PDSVDRGDSSM 213
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 235 ASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 414
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 123 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 179
Query: 415 PDYVQQGVKTM 447
PD V +G +M
Sbjct: 180 PDSVDRGDSSM 190
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAI 569
K +V TGSGKTLAY+LP +
Sbjct: 150 KSVVLGSHTGSGKTLAYLLPIV 171
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 180 LEDLEDLVGKKNSLEVRTCVAQIGICFAPTF 272
+ D++ +GK V C A++G+CF+ T+
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTY 560
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 528 TGSGKTLAYILPAIVHI 578
TGSGKTLAY+LP + I
Sbjct: 156 TGSGKTLAYLLPILSEI 172
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
FEE PD + ++ G+ PT +Q+ P + G
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG 147
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 501 WKDLVGVPKTGSGKTLAYILPAI 569
+KD+ TGSGKTLA+++P +
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLV 75
>At4g27040.1 68417.m03888 expressed protein
Length = 250
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +2
Query: 500 LERFSWRTQNGFRQNVGLHLASH--CAH--KQPTAYSER*WSDCFGLGRPXRELAQQISA 667
LE F+ + +N R+N H CA+ P A ++ W++ G+G EL QI
Sbjct: 46 LEEFARKHKNDIRKNPAFRAQFHEMCANIGVDPLASNKGFWAELLGIGDFYYELGVQIIE 105
Query: 668 SC 673
C
Sbjct: 106 VC 107
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIR 599
+D+ TGSGKTL+Y LP IV + P+R
Sbjct: 63 RDICVNSPTGSGKTLSYALP-IVQLLASRPVR 93
>At3g14810.1 68416.m01871 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 853
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -3
Query: 247 IWATHVLTSREFFFPTKSSRSSKSIATVAKSRRIIAEFVASSKF-GTTVSTAIIPVTRH- 74
+W VL + F F K R ++S A +R ++ VA + T+ ++ + H
Sbjct: 355 LWLGLVLLAWHFLFDKKVERETRSTALRYVTRVLVCLLVALIIWLVKTILVKVLASSFHM 414
Query: 73 -DYFSDLVEDVYLNYGFFLTQGPP 5
YF + E ++ Y GPP
Sbjct: 415 STYFDRIQESLFTQYVIETLSGPP 438
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQ 587
K + ++GSGKTLAY++P I + +
Sbjct: 412 KSCIIADQSGSGKTLAYLVPVIQRLREE 439
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +3
Query: 504 KDLVGVPKTGSGKTLAYILPAI---VHINNQPPIRRGDGPIALVLGGLXE 644
K L+ TGSGKT ++++P I +++ P + P+A+VL E
Sbjct: 11 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRE 60
>At3g59750.1 68416.m06666 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 626
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -3
Query: 208 FPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAIIPVTRHDYFSDLVEDVYLNYG 29
+P KSS +K I V + + A FVAS + TRH +++E+ + YG
Sbjct: 235 YPKKSSDRTKKILAVCLTLAVFAVFVAS-------GICFVFYTRHKKVKEVLEEWEIQYG 287
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 28.3 bits (60), Expect = 7.4
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -2
Query: 155 EKNYRRICCLLQIWNHRFHGYY 90
E+ + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,562,364
Number of Sequences: 28952
Number of extensions: 428389
Number of successful extensions: 1255
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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