Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0219.Seq
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    29   0.71 
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    27   2.8  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    27   5.0  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    26   6.6  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   6.6  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    26   6.6  
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    26   8.7  

>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -2

Query: 692 IFTYSHIKFGVIIVHNNYCCITQLHNFFTKKISFVYTMKRNVGNVK*HLCLQSFGLLT 519
           I+ Y +I   V+I H     I  +  F + K  + Y   +N+G V+  L L S   LT
Sbjct: 614 IYIYYNINGLVLIEHFPISSILNVKQFASTKCDYFYMNIQNIGTVRFRLYLDSSKALT 671


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +3

Query: 417 VHLTNACTPLFRQ 455
           VHL NAC+PLFR+
Sbjct: 140 VHLYNACSPLFRE 152


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
 Frame = +1

Query: 727 LINYLLSKXDVKIHLGLLPCQIIWFGI--------WNIWQGF 828
           +I  L  K  V    G L  QI+W G         WN WQGF
Sbjct: 416 IIPRLTEKYKVSFLAGALDLQILWTGTLLALQNTTWNGWQGF 457


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 785 HGRSPRWIFTSXLLKR*FIKFYVTFLLNYNYIFTYSHIKFGVIIVHNN 642
           +GR   W+F    L +  IK  +    N  Y+F  S  + GV++++N+
Sbjct: 570 NGRKLSWLFH---LSKGEIKARINPQTNVTYVFQVSTYQMGVLLLYNH 614


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 172 SNILILRKTSDSGKLPLKPSCYSEISHPLEP 264
           SN+L    +S S  +P+K + +S + HP+ P
Sbjct: 130 SNLLHPPTSSSSIPIPIKNAGHSNLDHPIRP 160


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 122 WQFI*TCPDSFDNGITGAISSSSEKLAIVV 211
           W  + T   S   GITG     SEKLA+ V
Sbjct: 109 WLLVHTLKSSSHKGITGIAVHPSEKLALTV 138


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 734 FIKFYVTFLLNYNYIFTYSHI 672
           F+KF  T++L  +Y+  Y+HI
Sbjct: 165 FLKFGATYVLTKSYLAKYTHI 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,752,965
Number of Sequences: 5004
Number of extensions: 76526
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)